Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_A01
(289 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0339 + 2603351-2603891,2604048-2604226 37 0.002
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 33 0.037
10_08_0930 - 21641818-21642240,21642731-21642820,21642902-216429... 31 0.20
12_01_0078 - 639421-639624,639706-639876,640392-640597,640985-64... 30 0.26
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 30 0.26
11_01_0077 - 602192-602395,602477-602647,603161-603366,605457-60... 30 0.34
08_02_1324 - 26144058-26144078,26145081-26145778,26145861-26145936 29 0.60
12_02_0872 + 23884715-23885770 27 2.4
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 27 2.4
01_06_0649 + 30861946-30862179,30862702-30862824,30863104-308631... 27 2.4
02_04_0148 - 20198407-20201424 27 3.2
02_02_0093 + 6692957-6693536,6693671-6694077,6694198-6694785 27 3.2
11_01_0737 + 6211149-6211466,6212022-6212183,6212290-6213101,621... 26 4.2
07_01_0716 + 5472618-5472818,5472943-5472985,5473672-5473761,547... 26 4.2
06_01_0372 + 2684208-2684390,2684867-2684968,2685197-2685290,268... 26 4.2
03_06_0364 + 33392181-33392487,33392919-33392994,33393671-333937... 26 5.6
07_03_0460 + 18425464-18427473 25 7.4
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398... 25 9.8
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 25 9.8
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 25 9.8
01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038 25 9.8
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 37.1 bits (82), Expect = 0.002
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Frame = +2
Query: 14 VAVHCVAGLGRAPVMVAIALIELGM--KYEEAVETIRDQRR---GAINAKQLSYLEKYRP 178
V VHC G GR+ +V L+ LG+ +++A IR++R+ A++ K L KYR
Sbjct: 174 VYVHCAFGHGRSACVVCAVLVALGIAENWKDAENIIREKRKIKMNAVHRKTLDDWSKYRA 233
Query: 179 KSRLKK 196
+ K
Sbjct: 234 SQKKDK 239
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 33.1 bits (72), Expect = 0.037
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Frame = +2
Query: 5 EAAVAVHCVAGLGRAPVMVAI-ALIE---LGMK----YEEAVETIRDQRRGAINAKQLSY 160
E + VHC AG+GR + I + IE LG K +E V+T+R QR G + ++ Y
Sbjct: 251 EHPIVVHCSAGIGRTGAYITIHSTIERLLLGDKSSYHLDETVKTLRTQRVGMVQTEK-QY 309
Query: 161 LEKYR 175
+ YR
Sbjct: 310 MFCYR 314
>10_08_0930 -
21641818-21642240,21642731-21642820,21642902-21642984,
21643512-21643605,21644366-21644488,21644893-21645168
Length = 362
Score = 30.7 bits (66), Expect = 0.20
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 20 VHCVAGLGRAPVMVAIALIEL-GMKYEEAVETIRDQR-RGAINAKQLSYLEKYRPKSRLK 193
VHC AG GR+ +V L++ M EA E +R +R R + + Q +E++ + R+K
Sbjct: 175 VHCKAGRGRSTTVVLCYLVQYKQMTPAEAYEHVRLRRPRVLLASAQRQAVEQFY-QLRVK 233
Query: 194 KNGSKNNC 217
K+G K+ C
Sbjct: 234 KSG-KSIC 240
>12_01_0078 -
639421-639624,639706-639876,640392-640597,640985-641100,
641669-641855,642104-642338
Length = 372
Score = 30.3 bits (65), Expect = 0.26
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 14 VAVHCVAGLGRAP-VMVAIALIELGMKYEEAVETIRDQR 127
V VHC AGLGRAP V +A M + A E + +R
Sbjct: 279 VYVHCTAGLGRAPAVAIAYMFWFENMNLKTAYEKLTSKR 317
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 30.3 bits (65), Expect = 0.26
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +2
Query: 11 AVAVHCVAGLGRAPVMVAIALIELGM--KYEEAVETIRDQRRG-AINAKQLSYLEKY 172
AV VHC G GR+ ++ L+ LG+ ++ A + IR++R ++N+ LE++
Sbjct: 174 AVYVHCAYGHGRSVCVMCALLVALGLAEDWKAAEQMIREKRPSISMNSLHRKSLEEW 230
>11_01_0077 -
602192-602395,602477-602647,603161-603366,605457-605682
Length = 268
Score = 29.9 bits (64), Expect = 0.34
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +2
Query: 14 VAVHCVAGLGRAPVMVAIA 70
V VHC AGLGRAP VAIA
Sbjct: 175 VYVHCTAGLGRAPA-VAIA 192
>08_02_1324 - 26144058-26144078,26145081-26145778,26145861-26145936
Length = 264
Score = 29.1 bits (62), Expect = 0.60
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +2
Query: 35 GLGRAPVMVAIALIELGMKYEEAVETIRDQRRGAINAKQLSYL 163
GLGR V +A+ LG Y + RD GA+ L +L
Sbjct: 158 GLGRVKVGTTLAMDALGTSYPPSAGAFRDDIAGAVVRPLLEFL 200
>12_02_0872 + 23884715-23885770
Length = 351
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 8 AAVAVHCVAGLGRAPVMVAIAL-IELGMKYEEAVETIR 118
AAV CV GR P +A+AL LGM EA+ +R
Sbjct: 241 AAVLRACVVIRGRVPTALALALPTNLGMAAAEALFQLR 278
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 286 VCVCVKAELHSLSTRHATDLLHATVVLTPVLL 191
+C+ LH L T H+ +++H V T +LL
Sbjct: 599 ICIGAAKGLHYLHTGHSDNIIHRDVKSTNILL 630
>01_06_0649 +
30861946-30862179,30862702-30862824,30863104-30863197,
30863819-30863901,30863984-30864073,30864176-30864562,
30864903-30864991,30867801-30867907,30868431-30868822
Length = 532
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 20 VHCVAGLGRAPVMVAIALIEL-GMKYEEAVETIRDQR 127
VHC AG GR+ +V LI+ M E A++ +R R
Sbjct: 161 VHCKAGRGRSTTIVLCYLIKYRSMSPEAALDHVRSIR 197
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 26.6 bits (56), Expect = 3.2
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -1
Query: 232 DLLHATVVLTPVLLQTRLRPVLFQVRELFSVDRATTLISYGLDSLLVLHAEFYERDGD 59
D L A + LTP RLR ++ +V ++S R+ + S LD+ L E + +GD
Sbjct: 150 DRLVAELRLTPAEAHARLRRIVSEVNSIYSALRSRSYFS-TLDAACALSQELPD-NGD 205
>02_02_0093 + 6692957-6693536,6693671-6694077,6694198-6694785
Length = 524
Score = 26.6 bits (56), Expect = 3.2
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +2
Query: 29 VAGLGRAPVMVAIALIELGMKYEEAVETIRDQRRGAINAKQLSYLEKY 172
+AGL V I +IE M Y E+ T DQ+ +I QLS+ E +
Sbjct: 298 LAGLASKSVSGVIYVIEGTMYYNESTSTTMDQKLESI-LGQLSFEEGF 344
>11_01_0737 +
6211149-6211466,6212022-6212183,6212290-6213101,
6213188-6213395,6214157-6214364,6214752-6215206,
6215585-6216011,6216391-6216471,6216571-6216761,
6216855-6216998
Length = 1001
Score = 26.2 bits (55), Expect = 4.2
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = -1
Query: 202 PVLLQTRLRPVLFQVRELFSVDRATTLISYGLDSLLVLHAEFYERDGDHDGRPAEPG 32
P ++ LRP L S +R + S LDSL EF++ D D+D P E G
Sbjct: 92 PAMVGAALRPGCLVSVSLISSNRGRSDGS-PLDSLFEECNEFFDLDVDNDLMPNEAG 147
>07_01_0716 +
5472618-5472818,5472943-5472985,5473672-5473761,
5473863-5473938,5474435-5474504,5474911-5475075,
5475261-5475404,5475547-5475651,5475876-5476022,
5476463-5476531,5476882-5476989,5477392-5477483,
5477559-5477598,5478129-5478221,5478386-5478958,
5479596-5479610
Length = 676
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 59 VAIALIELGMKYEEAVETIRDQRRGAINAK 148
V A +ELG Y+EA+E I +R GA AK
Sbjct: 127 VLTAFLELGSGYQEAIEEI-TRRMGAGMAK 155
>06_01_0372 +
2684208-2684390,2684867-2684968,2685197-2685290,
2685450-2685532,2685684-2685773,2686931-2687173
Length = 264
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 20 VHCVAGLGRAPVMVAIALIEL-GMKYEEAVETIRDQR-RGAINAKQLSYLEKYRPKS 184
+HC AG GR+ +V L++ M A E +R +R R + Q ++ + K+
Sbjct: 137 IHCKAGRGRSTTIVLCYLVKYKNMTPSTAFEHVRSKRARVLLTRSQWRVVQDFSKKN 193
>03_06_0364 +
33392181-33392487,33392919-33392994,33393671-33393740,
33394291-33394320,33394724-33394867,33394954-33395058,
33395496-33395642,33396994-33397069,33397726-33397814,
33398178-33398269,33398351-33398390,33398475-33398531
Length = 410
Score = 25.8 bits (54), Expect = 5.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 56 MVAIALIELGMKYEEAVETI 115
+V+ A +ELG Y+EA+E I
Sbjct: 117 LVSTAFLELGQGYQEAIEEI 136
>07_03_0460 + 18425464-18427473
Length = 669
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -1
Query: 235 TDLLHATVVLTPVLLQTRLRPVL 167
+DLLH L PV L+TRL+ L
Sbjct: 170 SDLLHGNSGLLPVTLETRLQIAL 192
>11_01_0514 -
3985204-3985266,3985920-3986061,3986144-3986276,
3986703-3986817,3987496-3987549,3987787-3987912,
3989179-3989319,3989470-3989552,3989643-3989733,
3990318-3990405,3992705-3992832
Length = 387
Score = 25.0 bits (52), Expect = 9.8
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Frame = +2
Query: 5 EAAVAVHCVAGLGRAPVMV----AIALIELG----MKYEEAVETIRDQRRGAINAKQLS 157
E + HC AG+GR + I I LG + + V+ R QR G + ++ S
Sbjct: 312 EHPIVAHCSAGIGRTGAYITIHNTIERILLGDMSALDLSKTVKKFRSQRPGMVQTEEQS 370
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 25.0 bits (52), Expect = 9.8
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -1
Query: 202 PVLLQTRLRPVLFQVRELFSVDRATTLISYGLDSLLVLHAEFYERDGDHDGRPAEPGDAV 23
P + T L+ ++ QV S + ++ YG LL++ +E + GDH A+ +A+
Sbjct: 1370 PKHICTILKRLILQVLSSGSNSQDNKVVQYGNYLLLLVASEVSLQSGDHGNCIAQATEAL 1429
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 26 CVAGLGRAPVMVAIALIELGMKYEEAVETIRDQRRGA 136
CVAGLG P M IA I + + ++ ++ GA
Sbjct: 229 CVAGLGHIPGMRNIACIVVSSSGDRRIDQMQKGGGGA 265
>01_06_1178 + 35149700-35150238,35151064-35151385,35151787-35152038
Length = 370
Score = 25.0 bits (52), Expect = 9.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +1
Query: 103 CRDHTRSTSWRDQR*TALVL 162
C DH ++ S+RDQ ALVL
Sbjct: 342 CIDHPKTVSFRDQILVALVL 361
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,158,614
Number of Sequences: 37544
Number of extensions: 85918
Number of successful extensions: 323
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 304131700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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