Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P24
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.3  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    25   9.5  

>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 540 LKQYSQLLALISYANNLIAICKNINEDYTKTNQVNKERYKIKLYAKP 400
           LK  + L  L+S A + I   KNIN +   T ++ K+ +K +L  KP
Sbjct: 120 LKFQNMLTLLMSRAFHSIQDEKNINIELLDTPKLEKDLHKSELQQKP 166


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 167 THRVKFS*WLRHLIHMNRVLRIKLTRRINY 256
           TH +K+  +L HL+H      ++L +  +Y
Sbjct: 278 THIIKYDDYLVHLVHETLQYSVRLEQHFHY 307


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +3

Query: 333 CYQCCPFYFSNLCTIVNKSYFF 398
           CY   PF    L  I+N SY F
Sbjct: 247 CYYTTPFEHQGLAAIMNVSYAF 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,735
Number of Sequences: 5004
Number of extensions: 34134
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)