Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P24
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0075 + 591537-591618,592410-592648,592840-593037,593129-59...    27   9.6  

>11_01_0075 +
           591537-591618,592410-592648,592840-593037,593129-593188,
           593313-593456,594655-594819,595611-595709,596057-596125,
           596216-596312,596922-597013,597085-597255,598053-598184,
           598479-598559,599131-599247,599344-599433
          Length = 611

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 413 SFILYRSLFTWLVFV*SSLMFLQI 484
           S+++Y SLF WL  V SS  + Q+
Sbjct: 393 SYLMYISLFLWLSAVVSSFFYFQL 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,040,331
Number of Sequences: 37544
Number of extensions: 157188
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)