Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P24
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence ...    29   2.1  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    28   3.7  
AF318610-1|AAK01098.1|  396|Caenorhabditis elegans ionotropic gl...    27   6.5  
AC006637-6|AAM54177.1|  328|Caenorhabditis elegans Glutamate rec...    27   6.5  
AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate rec...    27   6.5  
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie...    27   8.6  

>U00066-1|AAA50742.1|  490|Caenorhabditis elegans High incidence of
           males (increasedx chromosome loss) protein 10 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -2

Query: 513 LISYANNLIAICKNINEDYTKTNQVNKERYKIK 415
           LI+  +N  A  KN+  +YT+T Q+N+E  K K
Sbjct: 182 LINEQSNAKAELKNVVNEYTETRQINEELDKQK 214


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 346 VHFILAICVLLLTKVIFLWFCV*FYFIPLLIHLVSLRI--ILIDVFTNRNQIISVRYKCQ 519
           ++FIL      L    FLW+ +       + +L+ L I  IL   +  +N  +SV+Y+ Q
Sbjct: 173 INFILVPATSALQFNSFLWYMLYLKITNFICNLILLFIHKILHQRYRRKNVSLSVKYEMQ 232

Query: 520 EL 525
           E+
Sbjct: 233 EI 234


>AF318610-1|AAK01098.1|  396|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-6 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2   HEGLSEF*PKIY-FILSKQTLNYSISLNCN*T 94
           HEG++    + Y F++   TL+Y ++ NCN T
Sbjct: 273 HEGVNRVLNEKYVFLMESATLDYQVTQNCNLT 304


>AC006637-6|AAM54177.1|  328|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 6, isoform b protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2   HEGLSEF*PKIY-FILSKQTLNYSISLNCN*T 94
           HEG++    + Y F++   TL+Y ++ NCN T
Sbjct: 169 HEGVNRVLNEKYVFLMESATLDYQVTQNCNLT 200


>AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 6, isoform a protein.
          Length = 844

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 2   HEGLSEF*PKIY-FILSKQTLNYSISLNCN*T 94
           HEG++    + Y F++   TL+Y ++ NCN T
Sbjct: 685 HEGVNRVLNEKYVFLMESATLDYQVTQNCNLT 716


>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
           niemann pick c disease)related protein 2 protein.
          Length = 1274

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 352 FILAICVLLLTKVIFLWFCV*FYFIPLLI 438
           F LAI  LLL K+  +W    F+F+ L+I
Sbjct: 809 FKLAIAPLLLKKICRIWIAT-FFFVSLII 836


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,908,914
Number of Sequences: 27780
Number of extensions: 179408
Number of successful extensions: 399
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)