Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P24
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.1  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +3

Query: 360 SNLCTIVNKSYFFVVLRIVLFY 425
           S  CT+  +SY + VL +V+++
Sbjct: 172 SQNCTVEIESYGYTVLDVVMYW 193


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -2

Query: 540 LKQYSQLLALISYANNLIAICKNINEDYTKTNQVNKERYKIKLYAKPQ 397
           +K + +L  L+   N  IAI + + +D         +   +KL  KP+
Sbjct: 294 IKAFEELEELLGKRNICIAIKEKLVKDSGVAKDAAYDNIVLKLLTKPR 341


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -1

Query: 325 IDKIVTNKVNYNNIALRYL 269
           + KI+ N  N+N++  R L
Sbjct: 388 MQKIINNDFNFNDVNFRIL 406


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 453 KTNQVNKERYKIKLY 409
           +TN  NK  Y +K+Y
Sbjct: 242 ETNDPNKTEYTLKIY 256


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 113 LVLTTKQFSYNLVKYCN 63
           L+     +SYN VKYC+
Sbjct: 102 LIAPYPNWSYNDVKYCD 118


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 453 KTNQVNKERYKIKLY 409
           +TN  NK  Y +K+Y
Sbjct: 242 ETNDPNKTEYTLKIY 256


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,632
Number of Sequences: 438
Number of extensions: 2713
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)