Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P23
(309 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 38 3e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 37 8e-04
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 37 8e-04
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 36 0.001
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 1.1
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 25 1.9
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 25 3.4
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 23 7.9
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 23 7.9
SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomy... 23 7.9
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 38.3 bits (85), Expect = 3e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK---VTEIAKKGGEMWKSMK--DKS 227
++K + +PKRP SAY L+ + R +IK E G K V E+ K E W S+ D+
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK-ESLGEKSNDVKEVNKAMHEKWGSLSEDDRK 166
Query: 228 IWXXXXXXXXXQYAKDLESYNAN 296
+ Y +++ +YNA+
Sbjct: 167 TYEEEASKLREAYEEEMAAYNAS 189
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.7 bits (81), Expect = 8e-04
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +3
Query: 57 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 212
++RK T++ RP +A++L+ + +P + ++++K GEMW++
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.7 bits (81), Expect = 8e-04
Identities = 13/52 (25%), Positives = 30/52 (57%)
Frame = +3
Query: 57 AIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKS 212
++RK T++ RP +A++L+ + +P + ++++K GEMW++
Sbjct: 92 SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 36.3 bits (80), Expect = 0.001
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 63 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVTEIAKKGGEMWKSM--KDKSIWX 236
RKK+ T PKR MSA+M + RE++K+++P ++ G+ WK + ++ +
Sbjct: 9 RKKDPNT--PKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYE 66
Query: 237 XXXXXXXXQYAKDLESYNANGGGG 308
+Y ++ + Y+ G
Sbjct: 67 EKARQDKERYERERKEYDTKLANG 90
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 26.2 bits (55), Expect = 1.1
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +3
Query: 81 TDKPKRPMSA--YMLWLNSAREQIKSEHPGLKVTEIAKKGGEMW 206
TDKP + S + L+ E +S+HP + V + G E W
Sbjct: 119 TDKPSQSPSGNEVQVGLDMYNEGYRSDHPVIMVPGVISSGLESW 162
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.4 bits (53), Expect = 1.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -2
Query: 263 LFFSLGCFLFPNTFIFH*FPHFTSFFGYFSDFQPRM 156
LF+ L C P F H T+F YF+ P +
Sbjct: 211 LFYDLNCQDIPEFFEDHMSEFMTAFLNYFTYTNPSL 246
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 3.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 84 DKPKRPMSAYMLWLNSAREQIKSE 155
D PK+ +AY+L LN + E KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 191 FFGYFSDFQPRMFRLDLFSGTVEPQH 114
+F S QP + FSGTV P +
Sbjct: 1275 YFAKLSKKQPEWVSFNSFSGTVRPSN 1300
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -3
Query: 259 SLALAAFSSQILLSFID 209
S+AL+ +SQILL F+D
Sbjct: 340 SIALSKLTSQILLLFLD 356
>SPAC13G7.05 |||acyl-coA-sterol acyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 537
Score = 23.4 bits (48), Expect = 7.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 234 PKYFYLSLISTFHLLFWL 181
P YF S F++LFWL
Sbjct: 90 PNYFAKSEFRGFYVLFWL 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,358,103
Number of Sequences: 5004
Number of extensions: 25966
Number of successful extensions: 87
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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