Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P23
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    21   2.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   4.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   5.9  

>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 117 LWLNSAREQIKSEHPGLKV 173
           +W  + R + K ++PGL V
Sbjct: 54  IWFQNRRTKWKKQNPGLDV 72


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 192 GGEMWKSMKDK 224
           GGE+W  ++DK
Sbjct: 450 GGELWTVLRDK 460


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = -1

Query: 306 HHHHWH 289
           HH HWH
Sbjct: 208 HHWHWH 213


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = -1

Query: 306 HHHHWHCT 283
           HHHH H T
Sbjct: 351 HHHHHHQT 358



 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -1

Query: 309 HHHHH 295
           HHHHH
Sbjct: 351 HHHHH 355



 Score = 20.2 bits (40), Expect = 5.9
 Identities = 5/5 (100%), Positives = 5/5 (100%)
 Frame = -1

Query: 309 HHHHH 295
           HHHHH
Sbjct: 352 HHHHH 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,022
Number of Sequences: 438
Number of extensions: 1744
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)