Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P22
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    27   1.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.0  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   5.3  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +1

Query: 139 NALFIIFGLKITILYRYSYAEYC 207
           +ALFI++GL + + + +++AE C
Sbjct: 164 SALFIVYGLMLLVDFAHTWAERC 186


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 182 YRIVILSPNIINKAFHK*YHTS*KQQSKSALNLKKDHTSG*VESGVI 42
           ++I+ LS NII + FHK         S S LNL   H    + +G++
Sbjct: 274 HKIMSLSRNIIRRVFHK--PEVHLDPSASILNLSSSHGESNLTNGLL 318


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 258 KRISLKVLDMN*SFRETTVFCIGISVQNS 172
           K+ SL VLD N  F ETT+    I V +S
Sbjct: 5   KKDSLSVLDSNEFFGETTMVSPSIDVSSS 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,052,586
Number of Sequences: 5004
Number of extensions: 38615
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)