Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P21
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...   116   1e-27
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   0.59 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   0.78 
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    24   5.5  
SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces...    24   5.5  
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ...    24   5.5  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    24   7.3  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =  116 bits (279), Expect = 1e-27
 Identities = 58/105 (55%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
 Frame = +3

Query: 15  EEAVRDLIVATIALKYTQSNSVCYARDGQVIGIGAGQQSRIHCTRLAGGKAALWRLRSHP 194
           + A+ DL++AT ALKYTQSNSVCYA++G V+G+GAGQQSRIHC RLAG KA  W LR HP
Sbjct: 404 KSALIDLVIATTALKYTQSNSVCYAKNGMVVGLGAGQQSRIHCNRLAGDKADNWWLRHHP 463

Query: 195 AVLRAQDAFRAGVTRAVRANAIDNYVNGTIGTD-MPLEQWNALFE 326
            VL  Q  F+    R  ++NAID YV   +  +    EQW + FE
Sbjct: 464 KVLGMQ--FKKSAKRPEKSNAIDLYVLDAVPAEGSEREQWESAFE 506


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.5 bits (58), Expect = 0.59
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = +3

Query: 144 TRLAGGKAALWRLRSHPAVLRAQDAFRAGVTRAVRANAIDNYVNGTIGTDMPLEQ 308
           T L       W+ +++   +R     R      V ++A++ +VNGT  +  P E+
Sbjct: 43  TILDSSNDLFWKKKNYELRIRRNRLLRGSYAAGVSSSAMNGFVNGTQISSTPAER 97


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 159 GKAALWRLRSHPAVLRAQDAFRAGVTRAVRANAIDNYVNGTI 284
           G   +W LR    V   Q+ F  G+T   +A  +D    GTI
Sbjct: 183 GALQIWNLRVSKRVHEFQEFFGDGITSLTQAPVLDVLAVGTI 224


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 177 RLRSHPAVLRAQDAFRAGVTRAVRANAIDNYVNGTIGTDMPLEQWNA 317
           RL    + +   D  R  V  A+ A   D  +N   G  MP++QWNA
Sbjct: 356 RLLEKLSTIAVTDYQRLRVKVALLAVRFD--INTGSGQYMPIDQWNA 400


>SPAC3C7.03c |rhp55||RecA family ATPase Rhp55|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 350

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 166 ALPPASRVQWIRDC*PAPM 110
           AL   SRV W+  C P PM
Sbjct: 68  ALLSGSRVIWVETCQPIPM 86


>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 241 ARVTPARNASCARSTAGCERSR 176
           ARV+PA NAS   S  G + S+
Sbjct: 144 ARVSPASNASATASKNGAKSSK 165


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 267 YVNGTIGTDMPLEQW 311
           Y N  IG D+PL QW
Sbjct: 85  YPNSGIGIDVPLLQW 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,440
Number of Sequences: 5004
Number of extensions: 12197
Number of successful extensions: 46
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)