Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P21
(338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 36 0.008
03_05_0602 - 26042832-26044295 30 0.40
07_03_1281 - 25439634-25439750,25439868-25440071,25440328-254404... 29 0.93
01_03_0084 - 12286416-12286514,12286632-12286683,12286771-122868... 28 1.6
10_07_0056 + 12451510-12451554,12453099-12453149,12453754-124538... 28 2.1
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 27 2.8
03_01_0051 + 445035-445303,445380-445590,445737-445930,446151-44... 27 2.8
03_01_0591 - 4366400-4366558,4366782-4366985,4367078-4367152,436... 27 3.8
05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508 27 5.0
12_02_0306 + 17307166-17309091 26 6.6
08_02_1352 - 26325081-26325150,26325315-26325391,26326799-263269... 26 6.6
08_01_0840 - 8213932-8214414 26 6.6
06_03_0449 + 20907491-20910146,20910313-20910782 26 6.6
04_03_0939 + 20934694-20935050,20936324-20936519,20936645-20937708 26 6.6
03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451 26 6.6
02_05_0530 - 29804939-29805547,29805658-29805885,29805978-298062... 26 6.6
01_06_1842 - 40278875-40280131 26 8.7
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 35.9 bits (79), Expect = 0.008
Identities = 15/51 (29%), Positives = 32/51 (62%)
Frame = +3
Query: 15 EEAVRDLIVATIALKYTQSNSVCYARDGQVIGIGAGQQSRIHCTRLAGGKA 167
+ + D A + +K+ +SN++ A++ ++G+G+GQ +R+ R+A KA
Sbjct: 462 DSELSDAKFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRLESLRIAFRKA 512
>03_05_0602 - 26042832-26044295
Length = 487
Score = 30.3 bits (65), Expect = 0.40
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Frame = +3
Query: 69 SNSVCYARDGQVIGIGAGQQSRIHCTRLAGGKAALWRLRSHPAVLRAQD--AFRAGVTRA 242
+ SV YA G G+GA Q + + A G+ LW + + A + Q+ A G+ A
Sbjct: 280 AGSVLYACFGSTCGMGASQLTELAAGLRASGRPFLWVIPTTAAEVTEQEERASNHGMVVA 339
Query: 243 VR-ANAIDNYVNGTIGTDMPLEQWNALFE 326
R A D + +G + WN++ +
Sbjct: 340 GRWAPQADILAHRAVGGFLSHCGWNSILD 368
>07_03_1281 -
25439634-25439750,25439868-25440071,25440328-25440402,
25440477-25440631,25440704-25440824,25440946-25441020,
25441216-25441353,25441617-25441727,25441883-25441987,
25442061-25442139,25442488-25442549,25442634-25442699,
25442812-25442907,25443353-25443403,25443629-25443709
Length = 511
Score = 29.1 bits (62), Expect = 0.93
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 122 TGAYAYHLPVPGVTDGVALSVLERDGRHDQIPNSLL 15
TGAY++ + G+ D +A + RDG H N L
Sbjct: 138 TGAYSHSQGIKGLRDEIAAGIAARDGFHASGDNIFL 173
>01_03_0084 -
12286416-12286514,12286632-12286683,12286771-12286871,
12287498-12287650,12287703-12287762,12287872-12287998,
12288581-12288708,12289196-12289291,12289473-12289526,
12289603-12289689,12290954-12291057,12291163-12291246,
12291374-12291422,12291523-12291886,12292186-12292226
Length = 532
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +3
Query: 54 LKYTQSNSVCYARDGQVIGIGAGQQSRIHCTRLAGGKAALWRLRSHPAVLRAQDAFRAGV 233
L+Y Q++ D V+ + + S + + GK +WR+R+ + R + A GV
Sbjct: 256 LQY-QADESFMMHDDAVLSVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHAKGV 314
Query: 234 T 236
T
Sbjct: 315 T 315
>10_07_0056 +
12451510-12451554,12453099-12453149,12453754-12453804,
12453879-12453944,12454011-12454072,12454459-12454537,
12454618-12454722,12454824-12454934,12455017-12455154,
12455298-12455399,12455400-12455474,12455574-12455694,
12455768-12455922,12456004-12456078,12456160-12456363,
12457105-12457221
Length = 518
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 122 TGAYAYHLPVPGVTDGVALSVLERDG 45
TGAY++ + G+ D +A + RDG
Sbjct: 111 TGAYSHSQGIKGLRDAIAAGIASRDG 136
>08_02_1236 + 25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/75 (21%), Positives = 36/75 (48%)
Frame = -2
Query: 241 ARVTPARNASCARSTAGCERSRHSAALPPASRVQWIRDC*PAPMPITCPSRA*QTELL*V 62
A VT ++S ++ G + S+H A ++ + P P+P+ R + + V
Sbjct: 1354 ATVTNDADSSTIENSRGVDLSQHRALKKRPPTLKQLNKMEPMPLPLRNKGRRKMRQYIMV 1413
Query: 61 YLSAMVATIRSLTAS 17
++A+++ + + AS
Sbjct: 1414 AVAAVISVLALVVAS 1428
>03_01_0051 +
445035-445303,445380-445590,445737-445930,446151-446228,
447049-447141,448495-448525,448729-449058
Length = 401
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -2
Query: 229 PARNASCARSTAGCERSRHSAALPPASRVQWIRDC*PA---PMPITC 98
PA + SCA T+ E +S P ++ C PA P P+ C
Sbjct: 308 PAFSPSCAAGTSTTEVDEYSCCRTPTPGIREPATCPPAPRKPRPVAC 354
>03_01_0591 -
4366400-4366558,4366782-4366985,4367078-4367152,
4367240-4367394,4367476-4367596,4367720-4367794,
4369435-4369572,4369655-4369765,4369844-4369948,
4370327-4370405,4370561-4370622,4370698-4370763,
4370840-4371024,4371095-4371173
Length = 537
Score = 27.1 bits (57), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 122 TGAYAYHLPVPGVTDGVALSVLERDG 45
TGAY++ + G+ D +A + RDG
Sbjct: 150 TGAYSHSQGIKGLRDEIAAGIASRDG 175
>05_03_0486 + 14616354-14617200,14617288-14617329,14619433-14620508
Length = 654
Score = 26.6 bits (56), Expect = 5.0
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 69 SNSVCYARDGQVIGIGAG-QQSRIHCTRLAGGKAALWRLRSHPAVLRAQDAF 221
SNS+C+A G + + CT +AGG + +R+R P A +F
Sbjct: 153 SNSLCHAYAGAAGSTASACAPLPLCCTFVAGGSSTSYRIRLGPQSCSAYRSF 204
>12_02_0306 + 17307166-17309091
Length = 641
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Frame = +3
Query: 87 ARDG---QVIGIGAGQQSRIHCTRLAGGKAAL 173
ARDG ++IG+GAG + + C+ GG L
Sbjct: 52 ARDGVGVRLIGVGAGAGAGVGCSLTGGGDGIL 83
>08_02_1352 -
26325081-26325150,26325315-26325391,26326799-26326956,
26327433-26327518,26327635-26328317
Length = 357
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 116 AYAYHLPVPGVTDGVALSVLERDG 45
AY +HL +PG+ G +L V+ R G
Sbjct: 226 AYRWHLSLPGIVTG-SLQVMSRTG 248
>08_01_0840 - 8213932-8214414
Length = 160
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -2
Query: 307 CSRGMSVPIVPLT*LSIALARTARV-TPARNASCARSTAGCERSRHSAALPPASRVQWIR 131
CS S+P+ L++ L V AR A R A R R AA P SRV W R
Sbjct: 42 CSNA-SLPLPSAPDLALPLPELTGVCAAARTAVVGRWEAEVRRWRPEAAGPVPSRVSWGR 100
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 54 LKYTQSNSVCYARDGQVIGIG-AGQQSRIHCTRLAGGKAA 170
L + +S+ + R+ VIG G +G+ RIH T GG A
Sbjct: 688 LDFAESDVLGNIREENVIGSGGSGKVYRIHLTSRGGGATA 727
>04_03_0939 + 20934694-20935050,20936324-20936519,20936645-20937708
Length = 538
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 137 DTRLLTGAYAYHLPVPGVTDGVALSVLERDGR 42
D +L A + P P DGVA V ER GR
Sbjct: 11 DAIVLARALSSRSPSPSPADGVAAYVAERRGR 42
>03_05_0587 - 25878948-25879201,25879290-25879361,25881091-25881451
Length = 228
Score = 26.2 bits (55), Expect = 6.6
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 183 RSHPAVLRAQDAFRAGVTRAVRANAID 263
RSH AVL AF AGV A A A++
Sbjct: 3 RSHLAVLLGLLAFAAGVPAAAAATAVE 29
>02_05_0530 -
29804939-29805547,29805658-29805885,29805978-29806261,
29807095-29807199,29807648-29808155
Length = 577
Score = 26.2 bits (55), Expect = 6.6
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +3
Query: 102 VIGIGAGQQSRIHCTRLAGGKAALWRLRSHPAVLRAQDAFRAGVTRAVRANAI 260
+IG+G H GG+AA+ RL H A R + V R A +
Sbjct: 42 LIGVGGRGGPAAHAAPFKGGRAAVQRL-LHSAYKRGDTSVEVRVRRPAHAQQL 93
>01_06_1842 - 40278875-40280131
Length = 418
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = -2
Query: 256 ALARTARVTPARNASCARSTAGCERSRHSAALPPASRVQWIRDC*PAPMPITCPSRA*QT 77
A A PAR S A + R SAA PP S C A T P+ A T
Sbjct: 228 AAATAPGPAPARKVSSAPCSRSNSRGETSAAAPPPSIA--TAACAAAAAAATAPAPAPAT 285
Query: 76 ELL 68
+L
Sbjct: 286 SML 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,739,554
Number of Sequences: 37544
Number of extensions: 117357
Number of successful extensions: 439
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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