Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P20
         (391 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...   146   4e-36
AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical ...    30   0.67 
AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    27   6.2  
U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical pr...    26   8.2  

>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score =  146 bits (355), Expect = 4e-36
 Identities = 64/107 (59%), Positives = 89/107 (83%)
 Frame = +3

Query: 9   DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
           DRY ++  +WRKP+GIDNRVRRRF+G   MP IG+GS+++TR +LP+G++KVLV NV++L
Sbjct: 25  DRYRRVAPSWRKPKGIDNRVRRRFRGMRAMPTIGHGSDRRTRFVLPNGYKKVLVQNVKDL 84

Query: 189 EILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQ 329
           ++L+MQ+ KY  EI HGVS+K RK IVERA QL+I++TN  ARLR++
Sbjct: 85  DMLLMQSYKYIGEIGHGVSAKSRKGIVERAAQLNIKLTNGNARLRTE 131


>AL132848-1|CAB60388.2|  381|Caenorhabditis elegans Hypothetical
           protein Y47H10A.2 protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 87  QYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQN 209
           QYLM NI        R   PSGF K L+  +  L+I   QN
Sbjct: 213 QYLMNNIDLKYGLLIRCWHPSGFDKELLSGIPRLDIFYAQN 253


>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +1

Query: 88  NT*CPTLVMVQIRRPVTCYPAVFVKSWSTTFANWRS**CRTG 213
           N+ CP      IRRPV        +SWS T   W +  C+ G
Sbjct: 101 NSTCPAFPETDIRRPVN-------ESWSKTENGWTTRLCKNG 135


>U00040-4|AAM22034.1| 1139|Caenorhabditis elegans Hypothetical
           protein C18H2.5 protein.
          Length = 1139

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 111 YGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKY 218
           +  NK+ +         +L H VREL+ L M+ RKY
Sbjct: 604 FNENKQVKEFWSGSPGYLLEHVVRELDNLNMEARKY 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,802,130
Number of Sequences: 27780
Number of extensions: 181269
Number of successful extensions: 468
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 587646290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)