Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P20
         (391 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...   209   7e-57
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.6  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score =  209 bits (511), Expect = 7e-57
 Identities = 97/107 (90%), Positives = 104/107 (97%)
 Frame = +3

Query: 9   DRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPSGFRKVLVHNVREL 188
           DRY KLKRNWRKP+GIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP+GFRKVLVHNV+EL
Sbjct: 25  DRYSKLKRNWRKPKGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPTGFRKVLVHNVKEL 84

Query: 189 EILMMQNRKYCAEIAHGVSSKKRKAIVERAQQLSIRVTNAAARLRSQ 329
           E+LMMQNRK+CAEIAHG SSKKRK+IVERAQQLSIRVT A+ARLRSQ
Sbjct: 85  EVLMMQNRKFCAEIAHGGSSKKRKSIVERAQQLSIRVTYASARLRSQ 131


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 49  EVSTTEYVGASRVNT*CPTLVMVQIRRPVTCYPAVFVKS 165
           +++ T  V +S ++   P +VM+ I   + CY    VKS
Sbjct: 187 DLTPTYAVVSSSISFYVPCIVMLGIYCRLYCYAQKHVKS 225


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +3

Query: 93  LMPNIGYGSNKKTRHMLPSGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKAIVE 272
           L   +  G   + +  +P G+   +   + EL  L +  + +   + HG+    R  IV+
Sbjct: 66  LAAKVWNGQYARVQQSMPDGWETEISDQMLELRDLPISGKPFQIRMKHGLI---RDLIVD 122

Query: 273 R 275
           R
Sbjct: 123 R 123


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 237 GVSSKKRKAIVERAQQLSIR 296
           G   KK+K  +  AQ LSIR
Sbjct: 89  GAKQKKKKRSLMGAQGLSIR 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,029
Number of Sequences: 438
Number of extensions: 2658
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)