Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P18
(466 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 201 5e-53
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 201 5e-53
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 195 2e-51
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13... 30 0.20
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.46
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 27 1.4
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 2.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 26 3.3
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1... 25 4.3
SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr ... 25 5.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 7.5
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 7.5
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 7.5
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp... 24 9.9
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 24 9.9
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 9.9
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 201 bits (490), Expect = 5e-53
Identities = 91/144 (63%), Positives = 108/144 (75%)
Frame = +3
Query: 33 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 212
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 213 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 392
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 393 XXFCLKPGRKYCHVGRLSHEVGWK 464
LKPGRKYC VGRLS EVGWK
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWK 149
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 201 bits (490), Expect = 5e-53
Identities = 91/144 (63%), Positives = 108/144 (75%)
Frame = +3
Query: 33 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 212
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 213 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 392
NP+RG FHFRAPS+I K VRGM+PHKT RG+ AL L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 393 XXFCLKPGRKYCHVGRLSHEVGWK 464
LKPGRKYC VGRLS EVGWK
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWK 149
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 195 bits (476), Expect = 2e-51
Identities = 86/144 (59%), Positives = 106/144 (73%)
Frame = +3
Query: 33 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNV 212
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK++++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 213 NPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXX 392
NP+RG FHFRAPS+I K VRGM+PHKT RG AL+ L+ +G PPPFD
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 393 XXFCLKPGRKYCHVGRLSHEVGWK 464
LKP RKYC +GRLS EVGWK
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWK 149
>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
L13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 29.9 bits (64), Expect = 0.20
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Frame = +3
Query: 108 GNKVVVVRCEQINISGNFFRNKLKFMSFLRKRCNVN--PARGPFHFRAPSKILWKTVRGM 281
G+ VVV C +I ISG N K+ S + ++ R +L + V GM
Sbjct: 52 GDVVVVTDCSEIGISGRKLENH-KYYSHSGQPGHLKEWTMEEMAAKRGHKDLLRRAVGGM 110
Query: 282 IPHKTERGKNALRRLRTYDGCPPPF 356
+P + + ++RL YDG P+
Sbjct: 111 LP-RNKLWDRRMKRLYIYDGAEHPY 134
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.46
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 60 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 164
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -1
Query: 202 LLRRNDINFNLFLKKLPEMLICSQRT 125
+L NDIN N L KLP ++ ++RT
Sbjct: 37 VLANNDINENTVLLKLPPNILINKRT 62
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 173 FVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQV 60
F +I GNV LF+T+ H QQ L+ + E V
Sbjct: 392 FELSDILGNVVLFSTDQHGSRFIQQKLATATEEEREAV 429
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 3.3
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Frame = -1
Query: 466 YFHPTS-CERRPT*QYLRPGFRQNTRSAA--GTTTRRLLSNGGGQP 338
YF P C R P Y PGF + + AA G T S G+P
Sbjct: 219 YFTPGKHCPRLPVRVYTTPGFSEQGKFAAELGAKTLDFFSGVFGEP 264
>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 415
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -3
Query: 158 IAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAP 51
+A NV+ F++ + V+ ++ Y G++ +QVP P
Sbjct: 1 MASNVDKFSSRFYLNVNKEELKKEYVGKTIQQVPTP 36
>SPAC8C9.11 |||BolA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 80
Score = 25.0 bits (52), Expect = 5.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 101 QDLSNYCGQSTEQVPAPVDYYGLITKARH 15
QD+S CGQ+ E + + G T ARH
Sbjct: 23 QDMSGGCGQNFEVIIVSPLFEGKSTLARH 51
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 168 NKLKFMSFLRKRCNVNPARGPFHFRAPSKILWKTVRGMI 284
N+ + MS KRC RG HF + L+ ++ ++
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLL 1361
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.6 bits (51), Expect = 7.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 105 EGNKVVVVRCEQINISGNFFRNKLKFMSFL 194
E +V++ CE + +FF KLK+ +
Sbjct: 80 ERKVLVLIHCESLQSFDSFFAQKLKYADLI 109
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 461 PSDFVRETSHMTVFTARLQTEYT 393
PSDF+R S +V T+ L+T T
Sbjct: 631 PSDFIRLNSEESVGTSSLRTSQT 653
>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1210
Score = 24.2 bits (50), Expect = 9.9
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 196 RRNDINFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITAASRP 68
RR +INF P M + +TTT+FP L S P
Sbjct: 73 RRYEINFGQIYLSRPTMTE-ADGSTTTMFPQEARLRNLTYSSP 114
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 24.2 bits (50), Expect = 9.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -3
Query: 107 FQQDLSNYCGQSTEQVPAPVDYYGLI 30
+ +D+ CG T P P+D G++
Sbjct: 178 YSKDVPLLCGSLTIDCPTPIDLRGML 203
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 24.2 bits (50), Expect = 9.9
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 129 RCEQINISGNFFRNKL-KFMSF 191
RC +INI+G+ F N + F SF
Sbjct: 220 RCSKINITGSVFDNFIPSFFSF 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,057,727
Number of Sequences: 5004
Number of extensions: 43971
Number of successful extensions: 131
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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