Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P18
(466 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 184 2e-47
07_01_0071 - 522920-523063,524125-524212,524289-524677 182 1e-46
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 106 1e-23
11_04_0056 + 12942802-12942920,12943022-12943115 58 3e-09
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 38 0.005
04_01_0112 + 1151242-1151272,1151722-1151928,1151996-1152318,115... 29 2.4
02_05_0442 - 29044736-29046604 29 2.4
11_06_0432 + 23448482-23448570,23448987-23449100,23449514-234495... 28 3.2
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 28 3.2
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 28 4.3
02_02_0350 + 9239138-9240218,9240755-9240906,9241392-9241457,924... 27 5.6
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 27 9.8
06_01_0779 - 5823389-5823787 27 9.8
01_07_0193 - 41892361-41894010 27 9.8
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 184 bits (449), Expect = 2e-47
Identities = 82/151 (54%), Positives = 106/151 (70%)
Frame = +3
Query: 9 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 188
V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K++
Sbjct: 2 VSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLR 61
Query: 189 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 368
FLRKR N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+G PPP+D
Sbjct: 62 FLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRTK 121
Query: 369 XXXXXXXXXXFCLKPGRKYCHVGRLSHEVGW 461
L+PG KYC +G+LS EVGW
Sbjct: 122 RMVIPDALKVLRLQPGHKYCLLGQLSKEVGW 152
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 182 bits (444), Expect = 1e-46
Identities = 80/151 (52%), Positives = 104/151 (68%)
Frame = +3
Query: 9 VKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMS 188
V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K++
Sbjct: 2 VSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLR 61
Query: 189 FLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXX 368
FLRKR N P+ GP HFRAPS+I W+TVRGMIPHKT RG+ AL L+ +DG PPP+D
Sbjct: 62 FLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHKTPRGEAALANLKAFDGVPPPYDRTK 121
Query: 369 XXXXXXXXXXFCLKPGRKYCHVGRLSHEVGW 461
L+PG KYC +G+LS EVGW
Sbjct: 122 RMVVPDALKVLRLQPGHKYCLLGQLSKEVGW 152
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 106 bits (254), Expect = 1e-23
Identities = 45/85 (52%), Positives = 57/85 (67%)
Frame = +3
Query: 207 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXX 386
N P+ GP HFR+P+KILW+TVRGMIPHKT+RG+ AL RL+ Y+ PP+D
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPD 61
Query: 387 XXXXFCLKPGRKYCHVGRLSHEVGW 461
L+PG KYC +G+LS EVGW
Sbjct: 62 ALKVLRLQPGHKYCLLGQLSKEVGW 86
>11_04_0056 + 12942802-12942920,12943022-12943115
Length = 70
Score = 58.4 bits (135), Expect = 3e-09
Identities = 25/54 (46%), Positives = 32/54 (59%)
Frame = +3
Query: 300 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRKYCHVGRLSHEVGW 461
RG+ AL RL+ Y+G PPP+D L+PG KYC +G+LS EVGW
Sbjct: 9 RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGW 62
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 37.5 bits (83), Expect = 0.005
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Frame = +3
Query: 42 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKFM 185
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 186 SFLRKRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFD 359
R R P +I+ VRGM+P K G+ L+ Y G P +
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP-KGRLGRRLFTHLKVYKGAEHPHE 657
>04_01_0112 +
1151242-1151272,1151722-1151928,1151996-1152318,
1152552-1153793
Length = 600
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 124 SFVVNRLTFPAISSGTN*SLCHSFVKDVMSTQPVDLFTSELHQKSSGRPSEE*SHIRLSV 303
+ V+NR T + G N L S++ ++ S + VDL + LH + + ++ L V
Sbjct: 35 ALVINRTTLSELYLGGNQLLTTSWISNLTSLRVVDLSQNFLHGYNGICNLHQLEYLHLGV 94
Query: 304 GRMH 315
+H
Sbjct: 95 NMLH 98
>02_05_0442 - 29044736-29046604
Length = 622
Score = 28.7 bits (61), Expect = 2.4
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 151 EMLICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITMALLLKPVIF 11
E L+ +TT T+ ++ A + SRP + P P+ + P+ F
Sbjct: 61 EQLVAKTKTTRTVIATTNGRAAPSQSRPRRRPAPAAAASAASLPMTF 107
>11_06_0432 +
23448482-23448570,23448987-23449100,23449514-23449580,
23449614-23449741,23452786-23453071,23453264-23453414,
23453603-23453799
Length = 343
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 185 HKLQFVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAPVDYYGLITK 24
H++ V E+ +V F DH+ + L N+C + + VD G +TK
Sbjct: 69 HEIAGVVTEVGADVKGFKVGDHDCENCNSSLENHCSKCVVTYNS-VDSDGTVTK 121
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +3
Query: 207 NVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPP 353
NV R P FR P+K + +T R I R ++T PPP
Sbjct: 652 NVRANRVPESFRKPNKGIQETARSQISSSKSATPAQTRSIKTRAPNPPP 700
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 109 PSSRTLAITAASRPSKCPRPSITMALLLKPVIF 11
P RT + A + PS CP + ALLL P F
Sbjct: 141 PPIRTPVLPAHALPSSCPLEPLEFALLLLPSPF 173
>02_02_0350 +
9239138-9240218,9240755-9240906,9241392-9241457,
9242715-9242951
Length = 511
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 181 NFNLFLKKLPEM-LICSQRTTTTLFPSSRTLAITAASRPSKCPRPSITM 38
NF++ L + +IC+Q T FP+ +L I S+ S P P TM
Sbjct: 212 NFSVLLLPFSKCSVICTQDINTVWFPNLCSLEIRNCSKLSLPPMPHNTM 260
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 346 GQPSYVRSLLNAFFPRSVLCGII 278
G + VRS+L+ FPRSVL G +
Sbjct: 673 GWDNKVRSILSTSFPRSVLLGAL 695
>06_01_0779 - 5823389-5823787
Length = 132
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 94 RSCWKETKLWSFVVNRLTFPAISSGTN*SLCHSFVKDVM--STQPVDL 231
R CW T W R+ A +S T +LCHS ++ S P D+
Sbjct: 78 RCCW--TSWWIVTAPRMMLSAPTSYTWLNLCHSMASTILVRSNPPRDV 123
>01_07_0193 - 41892361-41894010
Length = 549
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -3
Query: 185 HKLQFVPEEIAGNVNLFTTNDHNFVSFQQDLSNYCGQSTEQVPAP--VDYYGLIT 27
H+ Q P I GN+ F N H F+ + L ST QV P + Y G+ T
Sbjct: 37 HRPQANP--ILGNLVAFLANGHRFLDWSTGLLAAAPASTMQVHGPLGLGYCGVAT 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,174,619
Number of Sequences: 37544
Number of extensions: 314689
Number of successful extensions: 829
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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