Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P18
         (466 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical pr...   206   6e-54
U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal p...   206   6e-54
AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,...    30   0.71 
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>Z46381-2|CAA86515.1|  202|Caenorhabditis elegans Hypothetical
           protein M01F1.2 protein.
          Length = 202

 Score =  206 bits (503), Expect = 6e-54
 Identities = 92/148 (62%), Positives = 114/148 (77%)
 Frame = +3

Query: 21  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRK 200
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 201 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 380
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 381 XXXXXXFCLKPGRKYCHVGRLSHEVGWK 464
                 F L+P RK+C VGRLSHEVGW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148


>U31528-1|AAA74904.1|  202|Caenorhabditis elegans 60S ribosomal
           protein L13A protein.
          Length = 202

 Score =  206 bits (503), Expect = 6e-54
 Identities = 92/148 (62%), Positives = 114/148 (77%)
 Frame = +3

Query: 21  GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLRK 200
           G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK+MSFLRK
Sbjct: 2   GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61

Query: 201 RCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXX 380
           RCN+NPARG FH+RAP KI W+TVRGM+PHKT RG  AL+ LR Y+G P  +        
Sbjct: 62  RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQK-TKSLH 120

Query: 381 XXXXXXFCLKPGRKYCHVGRLSHEVGWK 464
                 F L+P RK+C VGRLSHEVGW+
Sbjct: 121 APSASRFRLQPRRKFCVVGRLSHEVGWQ 148


>AF045642-2|AAC02580.1|  643|Caenorhabditis elegans Dynein chain,
           light intermediateprotein 1 protein.
          Length = 643

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 134 TTNDHNFVSFQQDLSNYCGQSTEQVPAPVDYYGLITK 24
           T N HNFVS  +D    C  + + +  PVD   L+TK
Sbjct: 396 TKNAHNFVSLSRD-GRICSWNVDNLTQPVDGKELMTK 431


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -1

Query: 184 INFNLFLKKLPEMLICSQRTTTTLFPSSRTLAITAASRPSKCPRPSIT 41
           + +  F   +P     +  TTT+ FP+S T   T A +PS   +P+ T
Sbjct: 200 VRYATFSPNIPMTTSTTPTTTTSTFPTSTTEKSTTA-QPSTTTKPTTT 246


>Z73973-2|CAA98264.1|  277|Caenorhabditis elegans Hypothetical
          protein F25D1.5 protein.
          Length = 277

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 15 MTGFSNKAIVIDGRGHLLGRLAAVI 89
          M  FS K+++I G  + +GR AAVI
Sbjct: 1  MARFSGKSVIITGSSNGIGRSAAVI 25


>Z81575-1|CAB04628.1|  277|Caenorhabditis elegans Hypothetical
          protein R08H2.1 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 15 MTGFSNKAIVIDGRGHLLGRLAAVI 89
          M  FS K+I+I G    +GR AAVI
Sbjct: 1  MARFSGKSIIITGSSSGIGRSAAVI 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,684,085
Number of Sequences: 27780
Number of extensions: 259280
Number of successful extensions: 660
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)