Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P17
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    26   1.8  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    25   4.1  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   5.5  
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    25   5.5  
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c...    24   7.2  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   7.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   9.5  

>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 234 LTSLSNCIWCCIWSRATCISPP-S*HSTHDGC 326
           +TSL  C++C +  R   + PP   H  H+ C
Sbjct: 783 VTSLKKCVYCELPLRGVLVYPPVCGHIGHESC 814


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 328 EHPSWVLCQEGGDIQVALDQIQHQMQ 251
           E+  W +C     + +A DQI +QMQ
Sbjct: 23  EYSKWTICFALLAVCIAYDQISYQMQ 48


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -1

Query: 383 TPARSGKAQSASSITTPSRTPIMGAMSRRWRYTGCSGPNT 264
           T   SG    + S+TTP+ TP+  +          SG NT
Sbjct: 588 TNTNSGNGDVSGSVTTPTSTPLSNSTVAPTSTFTSSGFNT 627


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 195 QSCCNWSCRSDCLLTSLSNCIW 260
           +S  +W C S   ++S+SN +W
Sbjct: 447 KSSKSWRCMSQTHVSSISNLVW 468


>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 315

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 178 FYLFLEVFPVNL*LIFDKCFYVLDVR 101
           F++  E+FP+N  L +  CF +L +R
Sbjct: 96  FFMRKELFPLNPHLKYTSCFPLLPLR 121


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 364 RHSQQVPLL---HLQEHPSWVLCQEGGDIQVALDQIQHQM 254
           R+  QV LL   + +E P  ++C  G D   + DQIQ ++
Sbjct: 590 RNEHQVELLVGEYGEEDPDVIVCYIGADDGKSPDQIQKEL 629


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 225  LTCSSSYNNFDWCSHIFIFF 166
            L C +S+NN+ W   +  F+
Sbjct: 1813 LLCKNSFNNYFWSREVKAFY 1832


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,139
Number of Sequences: 5004
Number of extensions: 30308
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)