Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P17
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788...    80   7e-16
10_08_0381 + 17398972-17399014,17400823-17400981,17401066-174012...    78   2e-15
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352...    70   6e-13
08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866...    28   2.3  
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    23   7.8  
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204...    26   9.2  

>04_04_0724 +
           27578337-27578371,27578492-27578607,27578717-27578875,
           27578954-27579129,27580406-27580683,27580759-27580894,
           27580984-27581095,27581177-27581268
          Length = 367

 Score = 79.8 bits (188), Expect = 7e-16
 Identities = 38/66 (57%), Positives = 47/66 (71%)
 Frame = +1

Query: 190 PIKVVVTGAAGQIAYSLLYQIASGAVFGPEQPVYLHLLDIAPMMGVLEGVVMELADCALP 369
           P+KV+VTGAAGQI Y+++  IA G + G +QPV LHLLD+      L GV MEL D ALP
Sbjct: 41  PVKVLVTGAAGQIGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAALP 100

Query: 370 LLAGVL 387
           LL GV+
Sbjct: 101 LLRGVV 106


>10_08_0381 +
           17398972-17399014,17400823-17400981,17401066-17401241,
           17401565-17401842,17401938-17402073,17402183-17402294,
           17402421-17402515
          Length = 332

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 36/66 (54%), Positives = 47/66 (71%)
 Frame = +1

Query: 190 PIKVVVTGAAGQIAYSLLYQIASGAVFGPEQPVYLHLLDIAPMMGVLEGVVMELADCALP 369
           P++V+VTGAAGQI Y+L+  IA G + G +QPV LH+LDI P    L G+ MEL D A P
Sbjct: 5   PMRVLVTGAAGQIGYALVPMIARGVMLGADQPVILHMLDIPPATESLNGLKMELVDAAFP 64

Query: 370 LLAGVL 387
           LL G++
Sbjct: 65  LLKGIV 70


>08_02_1600 +
           28133818-28133900,28134240-28134345,28135169-28135255,
           28135354-28135438,28135510-28135691,28135921-28135991,
           28136078-28136168,28136250-28136324,28136436-28136537,
           28136620-28136742,28136823-28136891,28136990-28137058,
           28137158-28137211,28137315-28137368
          Length = 416

 Score = 70.1 bits (164), Expect = 6e-13
 Identities = 36/73 (49%), Positives = 47/73 (64%)
 Frame = +1

Query: 166 EKDKNMAAPIKVVVTGAAGQIAYSLLYQIASGAVFGPEQPVYLHLLDIAPMMGVLEGVVM 345
           EK K+  + + V V+GAAG I+  LL+++ASG VFGP+QP+ L LL     +  LEGV M
Sbjct: 65  EKTKSWKSLVNVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSIQALEGVAM 124

Query: 346 ELADCALPLLAGV 384
           EL D   PLL  V
Sbjct: 125 ELEDSLYPLLREV 137


>08_01_0882 -
           8663006-8663068,8663260-8663328,8663410-8663515,
           8663889-8663944,8664163-8664222,8664310-8664529,
           8664561-8664655,8664757-8664882,8664954-8665008,
           8666163-8666290
          Length = 325

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 247 QIASGAVFGPEQPVYLHLLDIAPMMGVLE 333
           Q+A GA FGPE P  L  +DIA  + + +
Sbjct: 213 QLALGATFGPEPPTELVDVDIATHIDIYD 241


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 23.0 bits (47), Expect(2) = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 261 CCIWSRATCIS 293
           CC W R TC S
Sbjct: 51  CCRWERVTCSS 61



 Score = 21.8 bits (44), Expect(2) = 7.8
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 252 CIWCCI 269
           CIWCC+
Sbjct: 5   CIWCCL 10


>04_04_1694 -
           35419278-35419565,35419744-35419861,35420404-35420490,
           35420909-35420931,35421647-35421843,35421964-35422159,
           35422382-35422481,35423288-35423374,35424053-35424282,
           35424678-35424763,35425148-35425271,35425415-35428573,
           35430014-35430019
          Length = 1566

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 386 KTPARSGKAQSASSITTPSRTPIMGAMSRRWRYTG 282
           K   R+ +A+ AS  T P R  +  ++++ W++ G
Sbjct: 401 KPRKRNDRAKMASYFTAPHREVVHTSLTQAWKFCG 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,923,417
Number of Sequences: 37544
Number of extensions: 182371
Number of successful extensions: 526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)