Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P17
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   2.2  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   3.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   8.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 253 ASGAVFGPEQPVYLHLLDIAP 315
           A   +FGP  P Y+H  D++P
Sbjct: 483 ADDDLFGPASPAYVH-EDVSP 502


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 63   QQKLKRVITNKYE 25
            QQ+LKRV+TN+ +
Sbjct: 1063 QQQLKRVVTNQQQ 1075


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 348 FHYYTFKNTH 319
           F+YYT+K  H
Sbjct: 438 FYYYTYKGAH 447


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -3

Query: 348 FHYYTFKNTH 319
           F+YYT+K  H
Sbjct: 438 FYYYTYKGAH 447


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 243 LSNCIWCC 266
           +S C WCC
Sbjct: 9   MSCCCWCC 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,246
Number of Sequences: 438
Number of extensions: 2017
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)