Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P14
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    31   0.069
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   2.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   2.0  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   2.6  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   2.6  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    25   2.6  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    24   6.0  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    24   7.9  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 30.7 bits (66), Expect = 0.069
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 132 DGGQVK-DDEQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQIVDTDAADEPDDHW 299
           D   VK DD    + + IPD +  +  ++LE E +Y+P  ++Q  + D  DE D  W
Sbjct: 261 DPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLYIPDPEAQKPE-DWDDEEDGDW 316


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 96  IMSEPRKNRLSIDGGQVKDDEQVASYKPIPDSETAQEVE 212
           + S+PR +RL     +VK DE+  S K   D +T   V+
Sbjct: 28  VHSDPRFSRLKRGNFKVKVDERFKSLKEDKDFKTTASVD 66


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +3

Query: 117 NRLSIDGGQVKDDEQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQI----VDTDAADE 284
           NR+S+   +++     A  +P   S   Q    +       PLNQSQ     V  + ADE
Sbjct: 45  NRVSLPPLKIQKGSFPAIRQPTESSTHFQSSHSVSNAHNQSPLNQSQSSANPVTFEIADE 104

Query: 285 PDDHWEHN 308
           P   + H+
Sbjct: 105 PSPSFNHS 112


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3

Query: 138 GQVKDDEQVASYKPIPDSETAQEVEYLET 224
           GQ KDD+ V    P        EVEY +T
Sbjct: 25  GQSKDDKNVFDIHPTESEVIPGEVEYADT 53


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 155 VVFHLPSIYGEAVLPWLRHDLLRSCLTGYKTRESYPFLSD 36
           V++ +PS+YG   LP+   + +   L G+   E+  F S+
Sbjct: 291 VLYGVPSMYGVVTLPYSVREGINIFLDGHIPTENLRFRSE 330


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 123 LSIDGGQVKDDEQ--VASYKPIPDSETAQEVEYLETEEVYMPLNQSQIVDTDAADE 284
           +S+DG     DE   + SY P   ++      + + +++Y+  +  Q+++ D  D+
Sbjct: 445 MSLDGSLCALDESYNLLSYLPSDGAQVETLYSFPDLDQIYVAYDNFQLLNWDVVDQ 500


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +3

Query: 108 PRKNRLSIDGGQVKDDEQVAS--YKPIPDSETAQEVEYLETEEVYMP-LNQSQIVDT 269
           P +N+L I GGQ  D E +    Y  +   E  Q V   +T +   P   Q  I+D+
Sbjct: 448 PDENKLYIFGGQSYDQEFILDMCYIKLETREAVQHVRKNDTSQSPSPSFCQRSIMDS 504


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 246 NQSQIVDTDAADEPDDHWEHNTIKMLLDLYLQ 341
           ++S +V+TDA  E D  WE  T++  L  + Q
Sbjct: 298 SESTMVETDAEFEDDAKWE--TMRKALQWFTQ 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,486
Number of Sequences: 5004
Number of extensions: 26530
Number of successful extensions: 88
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)