Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P14
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0860 - 7142913-7144895 29 0.78
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131... 29 1.0
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 28 2.4
02_01_0008 - 50576-50671,50767-50829,50918-50961,51048-51129,522... 27 4.1
01_03_0137 - 12904727-12904981,12907192-12907605 27 4.1
03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824 27 5.5
05_07_0144 - 28007477-28008412 26 7.2
02_03_0101 + 15233783-15234601 26 7.2
12_02_0663 + 21653536-21653541,21654027-21654212,21654316-216543... 26 9.6
>07_01_0860 - 7142913-7144895
Length = 660
Score = 29.5 bits (63), Expect = 0.78
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 96 IMSEPRKNRLSIDGGQVKDDEQVASYKPIP 185
I++ R+ R + G V DDE VAS P+P
Sbjct: 288 IVTIRRRRRSTTTAGDVSDDESVASLPPLP 317
>03_06_0014 -
31012116-31012229,31012773-31012985,31013058-31013171,
31013909-31014040,31014624-31014692,31014763-31015017,
31015347-31015520,31016104-31016280,31016999-31017107,
31017343-31017506,31018221-31018517
Length = 605
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 150 DDEQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQIVDTDAADEPDDHWEH 305
D++ +A Y D++ A E + E Y L +VD D EPD++ EH
Sbjct: 173 DEDGLAPYGSRDDNKHAHE-SLMNDEGPYEELLPEDMVDEDKHYEPDENIEH 223
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Frame = +1
Query: 133 MEGK*KTTNKSLHINLFQILKQLRKSSI*RLKKYICHLTNHR---LWIQMLQMSQMTIGN 303
++GK ++ SL++N+ K LRK ++ Y+CH++++ LW ++ M+ N
Sbjct: 94 IQGKRSNSHSSLYVNMGDSEKVLRK-----MRFYLCHVSSNEILSLWGSIVSSCPMST-N 147
Query: 304 ITP 312
I P
Sbjct: 148 IQP 150
>02_01_0008 -
50576-50671,50767-50829,50918-50961,51048-51129,
52205-52371,52502-52654,52780-52960,53452-53540,
53599-53799,54804-55147,55397-55626
Length = 549
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 122 AVLPWLRHDLLRSCLTGYKTRESYPFLSDVQF 27
AVL W LLR CL + E+YP + F
Sbjct: 223 AVLAWYTGVLLRRCLDSKEGLETYPDIGHAAF 254
>01_03_0137 - 12904727-12904981,12907192-12907605
Length = 222
Score = 27.1 bits (57), Expect = 4.1
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 132 DGGQVKDDEQVASYKPIPDSETAQEVEYLETEEV---YM--PLNQSQIVDTDAADEPDDH 296
DGG DD+ D E +EVE E EE+ Y+ PL ++ + + EPD++
Sbjct: 107 DGGDDDDDDDDDDDDDDDDEEEEEEVEGDEQEELGTEYLVKPLGDAEDEEHSSDFEPDEN 166
Query: 297 WE 302
E
Sbjct: 167 GE 168
>03_02_0888 + 12189844-12190035,12190130-12190365,12192632-12192824
Length = 206
Score = 26.6 bits (56), Expect = 5.5
Identities = 21/60 (35%), Positives = 28/60 (46%)
Frame = +3
Query: 15 LRPFKLYIRKKGITFSRFITG*ARP**IMSEPRKNRLSIDGGQVKDDEQVASYKPIPDSE 194
LRPF + R G A P + +PR+ RLS+ V D+Q S +P PD E
Sbjct: 9 LRPFATLAPSRA-ALPRVGAGFALPPAVSCQPRRRRLSLRAVAVDSDQQ-GSPEP-PDQE 65
>05_07_0144 - 28007477-28008412
Length = 311
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 96 IMSEPRKNRLSIDGGQVKDDEQVASYKPIPDS 191
I+ + RL G QVKDD V +++P P+S
Sbjct: 253 IIRQKETTRLVDRGVQVKDDVAVWAFRPDPNS 284
>02_03_0101 + 15233783-15234601
Length = 272
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 126 SIDGGQVKDDEQVASYKPIPDSETAQEVEYLETEEVYMP 242
SIDGGQV DD +V K + +TE++ +P
Sbjct: 10 SIDGGQVLDDMEVVEMKYLFGKVLMPSDVSWDTEQLVIP 48
>12_02_0663 +
21653536-21653541,21654027-21654212,21654316-21654393,
21654581-21654694,21654799-21654865,21654954-21655015,
21655123-21655262,21655552-21655678,21655758-21655872,
21656111-21656199,21656593-21656733,21657067-21657192,
21657655-21657714,21658285-21658443
Length = 489
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = -2
Query: 167 SDLFVVFHLPSIYGEAVLPWLRHDLLRSCLTGYKTRESYPFLSDVQF 27
SDL LP G A++PW L CL G+ TRE LS +F
Sbjct: 112 SDLTGTASLPPCAGHALVPWGNKIL---CLAGH-TREPTESLSVKEF 154
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,803,322
Number of Sequences: 37544
Number of extensions: 156654
Number of successful extensions: 425
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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