Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P14
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81587-7|CAB04707.1|  185|Caenorhabditis elegans Hypothetical pr...    29   0.94 
Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    27   2.9  
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    27   2.9  
U41273-6|AAA82457.2|  404|Caenorhabditis elegans Hypothetical pr...    27   2.9  
Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical pr...    27   3.8  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   3.8  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   3.8  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   3.8  
U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical pr...    26   6.6  
U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical pr...    26   6.6  
EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.      26   8.7  
AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical...    26   8.7  

>Z81587-7|CAB04707.1|  185|Caenorhabditis elegans Hypothetical
           protein T06G6.9 protein.
          Length = 185

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 22/74 (29%), Positives = 34/74 (45%)
 Frame = +3

Query: 114 KNRLSIDGGQVKDDEQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQIVDTDAADEPDD 293
           K +LSI+  +V   E+   YK +  S  AQ+V    +E++    N   I+DT  A    D
Sbjct: 28  KEKLSIEEAEVVLREKYGKYKYVESSMLAQKVRM--SEKIPEFENSLSIIDTLIAKRAAD 85

Query: 294 HWEHNTIKMLLDLY 335
                T  +  D+Y
Sbjct: 86  ESFETTFLLSDDVY 99


>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 FLWCYVPNGHLAHLQHLYPQ 259
           F WC V    LAHLQ++Y Q
Sbjct: 32  FRWCGVEQVDLAHLQNVYDQ 51


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 FLWCYVPNGHLAHLQHLYPQ 259
           F WC V    LAHLQ++Y Q
Sbjct: 32  FRWCGVEQVDLAHLQNVYDQ 51


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 FLWCYVPNGHLAHLQHLYPQ 259
           F WC V    LAHLQ++Y Q
Sbjct: 32  FRWCGVEQVDLAHLQNVYDQ 51


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 318 FLWCYVPNGHLAHLQHLYPQ 259
           F WC V    LAHLQ++Y Q
Sbjct: 32  FRWCGVEQVDLAHLQNVYDQ 51


>U41273-6|AAA82457.2|  404|Caenorhabditis elegans Hypothetical
           protein C26B9.1a protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
 Frame = +3

Query: 117 NRLSIDGGQVKDDEQVASYKPIPD-SETAQEVEYLETEEVYMPL-NQSQIVDTD 272
           + +S+    + D+EQ        + SET +E++ L+TEE++ PL ++S   +TD
Sbjct: 16  DEISLKQVSINDEEQTTGITTGKNQSETNEEID-LKTEELHDPLQSESSAAETD 68


>Z92784-5|CAB07196.3|  554|Caenorhabditis elegans Hypothetical
           protein F31C3.6a protein.
          Length = 554

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 102 SEPRKNRLSIDGGQVKDDEQVASYKPIPDSETAQEVEYLETEEV 233
           S PR  + S+D G+   DE     +  P +E  +E+  +   +V
Sbjct: 413 SSPRSEQKSVDSGRESRDESEEDEETAPGTEGQKEISTMTQSKV 456


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 219  ETEEVYMPLNQSQIVDTDAADEPDDHWE 302
            E  E   P N+  I  TD A++P D WE
Sbjct: 1871 ELPEYLKPPNEWTIQYTDDAEQPKDQWE 1898


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 219  ETEEVYMPLNQSQIVDTDAADEPDDHWE 302
            E  E   P N+  I  TD A++P D WE
Sbjct: 1934 ELPEYLKPPNEWTIQYTDDAEQPKDQWE 1961


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 219  ETEEVYMPLNQSQIVDTDAADEPDDHWE 302
            E  E   P N+  I  TD A++P D WE
Sbjct: 1934 ELPEYLKPPNEWTIQYTDDAEQPKDQWE 1961


>U80438-1|AAB37631.1|  400|Caenorhabditis elegans Hypothetical
           protein T19B4.5 protein.
          Length = 400

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 123 LSIDGGQVKDDEQVASYKPIPDSETAQEVEY 215
           L IDGG   D++QVA  + + D  T   V++
Sbjct: 14  LVIDGGDPGDEQQVAHEEIVDDGSTEMVVDH 44


>Z81581-4|CAB04663.2|  568|Caenorhabditis elegans Hypothetical
           protein T02E1.2 protein.
          Length = 568

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = +3

Query: 132 DGGQVKDDEQVASYKPIPDSETAQEVEYL 218
           DG  V++DE++ +++ +P SE  ++V +L
Sbjct: 123 DGNPVEEDEEMPAHEDLP-SEDTEDVRFL 150


>U40029-8|AAA81128.2|  275|Caenorhabditis elegans Hypothetical
           protein F10G7.3 protein.
          Length = 275

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 150 DDEQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQIVDTDAADEPDDHWEHN 308
           D++ VA  +P+ D     E   +  E+  MPLN     D D  +E DD  E N
Sbjct: 156 DEDPVA--EPVED-----EANRVFAEDDLMPLNDDGQEDDDEEEEDDDEMEAN 201


>EU068466-1|ABU49431.1|  801|Caenorhabditis elegans PRO-3 protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 150 DDEQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQIVDTDAAD 281
           DDE++   + + D E   E+   E EE+     +  +V+ +A++
Sbjct: 590 DDEEIEDEEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASE 633


>AL132948-40|CAD31812.3|  801|Caenorhabditis elegans Hypothetical
           protein Y39B6A.14 protein.
          Length = 801

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +3

Query: 150 DDEQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQIVDTDAAD 281
           DDE++   + + D E   E+   E EE+     +  +V+ +A++
Sbjct: 590 DDEEIEDEEEMDDEEEEIEISDEEEEEIDDEAEEEAVVEEEASE 633


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,686,010
Number of Sequences: 27780
Number of extensions: 143060
Number of successful extensions: 486
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)