Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P14
         (351 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          20   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 293 VIWLICSICIHNL*LVKWH---IYFFSL 219
           V+W++C  CI     VKW    +YF SL
Sbjct: 215 VVWIMCYFCIWK--GVKWTGKVVYFTSL 240


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 293 VIWLICSICIHNL*LVKWH---IYFFSL 219
           V+W++C  CI     VKW    +YF SL
Sbjct: 268 VVWIMCYFCIWK--GVKWTGKVVYFTSL 293


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 114 KNRLSIDGGQVK-DDEQVASYKPIPDS 191
           +N + ++  QV  DDE  AS+K + DS
Sbjct: 147 ENAVKVNSVQVPTDDEPYASFKAMEDS 173


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 4/11 (36%), Positives = 9/11 (81%)
 Frame = -2

Query: 296 MVIWLICSICI 264
           +++W++C  CI
Sbjct: 181 LLVWILCYFCI 191


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +3

Query: 156 EQVASYKPIPDSETAQEVEYLETEEVYMPLNQSQI 260
           E +  YKP P    A E  ++       P N S +
Sbjct: 134 EYLDKYKPTPLGAVATEKMFVARHLAETPKNTSAV 168


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -2

Query: 143  LPSIYGEAVLPWLRHDLLRSCLTGYKTRESY 51
            + S  G  V PW     L     G  TRE Y
Sbjct: 1316 ITSFGGHVVRPWRGSATLACNAVGDPTREWY 1346


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = -2

Query: 143  LPSIYGEAVLPWLRHDLLRSCLTGYKTRESY 51
            + S  G  V PW     L     G  TRE Y
Sbjct: 1312 ITSFGGHVVRPWRGSATLACNAVGDPTREWY 1342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,873
Number of Sequences: 438
Number of extensions: 1801
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)