Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P13
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma...    93   2e-20
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    28   0.86 
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   1.5  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    26   3.5  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   3.5  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   4.6  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    25   8.0  

>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 127

 Score = 93.5 bits (222), Expect = 2e-20
 Identities = 47/127 (37%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
 Frame = +2

Query: 86  MSW*DYVDKQLMASRCVSKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 262
           MSW  YVD  L+ +  + +AAI    G+ VWA S GF +S  E+  + AGF++   +   
Sbjct: 1   MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60

Query: 263 GVTIAGTRYIYLSGTERIIRAKLGKVGVHRMKTQQAVVISLYEEPIQPQQAASVVEKLGD 442
           G+ +AG +YI +    R I  KL K G+  + T+  +++S Y E   P +AA + E L D
Sbjct: 61  GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120

Query: 443 YLITCGY 463
           YL+  GY
Sbjct: 121 YLVGVGY 127


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 0.86
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 248 VIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHI 129
           +I+ ++  L SPLHL   RT+ ++ RH  +  ++  L+ I
Sbjct: 300 LIYQKDFHLISPLHLTTLRTVPSFQRHIEQRLEIGDLESI 339


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 261 PLVRSDSFSKPATIFATSSFDISNPSDLAQTFPS*PAIAAFETH 130
           PLV ++S S P++        +SNPS  +   PS P  +  E H
Sbjct: 175 PLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECH 218


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 274 SGHAVHLPQRYRTYHTRKA 330
           SGH  + PQ++ +YH  KA
Sbjct: 150 SGHIANWPQQWASYHATKA 168


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
 Frame = -3

Query: 188 LLTW--PRHFRRDRQLLPLKHIWRPL-TVCRHNLTSSF*ISSIKNK 60
           LLTW     F R+R  L   H+   L T C H L S+     I NK
Sbjct: 354 LLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNK 399


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 131 CVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLT 256
           C S  ++   D NV A +     SKD + +++ G E   +LT
Sbjct: 184 CASPRSVNSRDRNVMAVARYSVYSKDNIQEVI-GLEKLGILT 224


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 52  SVVLFLIELIQNELVRLCRQTVNGLQMCFKGSNCRSRRKCLGQVRR 189
           S VLFLI+     L  +CR ++  +      SN  +++    +V +
Sbjct: 109 SRVLFLIQSFPTRLYHICRNSIKSILQFQNFSNIFAKKNLFPKVSK 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,054
Number of Sequences: 5004
Number of extensions: 36526
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)