Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P13
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 99 9e-22
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 99 9e-22
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 95 4e-20
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.013
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814 29 2.0
06_01_0008 + 141405-142421 29 2.6
05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727 27 6.0
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 27 6.0
10_01_0216 - 2329413-2330419,2331382-2331537,2332363-2332897,233... 27 8.0
09_04_0377 + 17086775-17088310 27 8.0
06_03_0630 + 22926652-22928133 27 8.0
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 99 bits (238), Expect = 9e-22
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +2
Query: 86 MSW*DYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 253
MSW YVD+ LM ++ AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 254 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHRMKTQQAVVISLYEEPIQPQQAASVVE 430
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 431 KLGDYLITCG 460
+LGDYL+ G
Sbjct: 121 RLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 99 bits (238), Expect = 9e-22
Identities = 52/130 (40%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +2
Query: 86 MSW*DYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 253
MSW YVD+ LM ++ AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 254 TSGGVTIAGTRYIYLSGTE-RIIRAKLGKVGVHRMKTQQAVVISLYEEPIQPQQAASVVE 430
G+ + T+Y+ + G +IR K G G+ KT QA+V+ +Y+EP+ P Q VVE
Sbjct: 61 APTGLFLGPTKYMVIQGEPGAVIRGKKGSGGITVKKTGQALVVGIYDEPMTPGQCNMVVE 120
Query: 431 KLGDYLITCG 460
+LGDYL+ G
Sbjct: 121 RLGDYLVEQG 130
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 94.7 bits (225), Expect = 4e-20
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
Frame = +2
Query: 86 MSW*DYVDKQLMAS---RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 253
MSW YVD LM ++ AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 254 TSGGVTIAGTRYIYLSGTERI-IRAKLGKVGVHRMKTQQAVVISLYEEPIQPQQAASVVE 430
G+ + GT+Y+ + G + IR K G G+ KT ++++ +Y+EP+ P Q +VE
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVE 120
Query: 431 KLGDYLITCG 460
+LGDYLI G
Sbjct: 121 RLGDYLIEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.013
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 179 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 271
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
Length = 775
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 298 QRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRRLFNY 453
QR T ++ RR S + RR S R+ S R RSR R +NY
Sbjct: 187 QRRPTMSRSYSQNDRRVSSDSRLDRRRRSRSRSRSRSRSRSRSRTRTRSYNY 238
>06_01_0008 + 141405-142421
Length = 338
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -2
Query: 219 FATSSFDISNPSDLAQTF 166
FA+ SFD+ NPSDLA F
Sbjct: 69 FASPSFDLRNPSDLAAFF 86
>05_01_0324 + 2549354-2549482,2550092-2550493,2550789-2551727
Length = 489
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 295 PQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSRE 432
P+R+ + + K+R R ++ SR + R +T +GR RE
Sbjct: 376 PRRFESMRSEKSRSDRSRNYTSRGSRSSIEKPRNSATASGRSVFRE 421
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 206 DEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTERIIRAKLGKVG 343
DE+A + GF E ++ GG G Y+ G R + K KVG
Sbjct: 159 DELAAVTGGFAEEKVIGEGGF---GKVYMGALGDGRCVAVKQLKVG 201
>10_01_0216 -
2329413-2330419,2331382-2331537,2332363-2332897,
2333026-2333514
Length = 728
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 328 LCAYDTFCTAEVDVPRARYR 269
L AY FCTA D+PRA R
Sbjct: 332 LHAYSAFCTAVGDLPRAERR 351
>09_04_0377 + 17086775-17088310
Length = 511
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 271 DSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHST 405
DSG + L ++ TR+ ++GR+ SH +S+R+ R HS+
Sbjct: 194 DSGESDSLSDSSKSDDTRRKKKGRKGSHR--SSKRSRHRRRHHSS 236
>06_03_0630 + 22926652-22928133
Length = 493
Score = 27.1 bits (57), Expect = 8.0
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 128 RCVSKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIA 277
RCV A G DG V A++E + E + + VA + N SG VT A
Sbjct: 438 RCVELAMAGGGDGGVRARAERWRERAAEAVAAGGSSERNLRAFASGAVTQA 488
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,899,390
Number of Sequences: 37544
Number of extensions: 257655
Number of successful extensions: 638
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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