Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P13
(487 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC008596-1|AAH08596.1| 336|Homo sapiens TMEM19 protein protein. 36 0.076
AK001798-1|BAA91918.1| 298|Homo sapiens protein ( Homo sapiens ... 36 0.076
AK223148-1|BAD96868.1| 336|Homo sapiens transmembrane protein 1... 34 0.23
BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein. 31 2.8
BC016010-1|AAH16010.2| 140|Homo sapiens transmembrane protein 1... 31 2.8
AL137269-1|CAB70668.1| 171|Homo sapiens hypothetical protein pr... 31 2.8
AB012644-1|BAA32813.1| 227|Homo sapiens TAP1N protein. 30 5.0
L41887-1|AAA88098.1| 238|Homo sapiens splicing factor, arginine... 29 6.6
L22253-1|AAA35495.1| 238|Homo sapiens 9G8 splicing factor protein. 29 6.6
L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor ... 29 6.6
BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor, argini... 29 6.6
BT006745-1|AAP35391.1| 238|Homo sapiens splicing factor, argini... 29 6.6
BC022328-1|AAH22328.1| 238|Homo sapiens splicing factor, argini... 29 6.6
BC017908-1|AAH17908.1| 238|Homo sapiens splicing factor, argini... 29 6.6
BC017369-1|AAH17369.1| 238|Homo sapiens splicing factor, argini... 29 6.6
BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor, argini... 29 6.6
BC000997-1|AAH00997.1| 238|Homo sapiens splicing factor, argini... 29 6.6
AY513287-1|AAT08040.1| 238|Homo sapiens aging-associated protei... 29 6.6
AY166860-1|AAN87842.1| 238|Homo sapiens arginine/serine-rich sp... 29 6.6
AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor, argini... 29 6.6
AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor, argini... 29 6.6
AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor, argini... 29 6.6
AC074366-2|AAX93102.1| 238|Homo sapiens unknown protein. 29 6.6
AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor, argini... 29 6.6
Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine r... 29 8.7
X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25... 29 8.7
U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine r... 29 8.7
BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor, n... 29 8.7
BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor, n... 29 8.7
AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor, n... 29 8.7
AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein. 29 8.7
AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic acet... 29 8.7
>BC008596-1|AAH08596.1| 336|Homo sapiens TMEM19 protein protein.
Length = 336
Score = 35.9 bits (79), Expect = 0.076
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 110 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 283
KQ AS C+S AA+A G+ WA G +SK +++ +E + T+GGVT+ G
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223
Query: 284 RYIYLSGT 307
L GT
Sbjct: 224 VSSLLGGT 231
>AK001798-1|BAA91918.1| 298|Homo sapiens protein ( Homo sapiens
cDNA FLJ10936 fis, clone OVARC1000959, weakly similar to
HYPOTHETICAL PROTEIN MJ0933. ).
Length = 298
Score = 35.9 bits (79), Expect = 0.076
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +2
Query: 110 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 283
KQ AS C+S AA+A G+ WA G +SK +++ +E + T+GGVT+ G
Sbjct: 165 KQYSASWMCLSLLAALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223
Query: 284 RYIYLSGT 307
L GT
Sbjct: 224 VSSLLGGT 231
>AK223148-1|BAD96868.1| 336|Homo sapiens transmembrane protein 19
variant protein.
Length = 336
Score = 34.3 bits (75), Expect = 0.23
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +2
Query: 110 KQLMAS-RCVSK-AAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 283
KQ AS C+S A+A G+ WA G +SK +++ +E + T+GGVT+ G
Sbjct: 165 KQYSASWMCLSLLVALACSAGDTWASEVGPVLSKSS-PRLITTWEKVPVGTNGGVTVVGL 223
Query: 284 RYIYLSGT 307
L GT
Sbjct: 224 VSSLLGGT 231
>BC054003-1|AAH54003.1| 1192|Homo sapiens RNASEN protein protein.
Length = 1192
Score = 30.7 bits (66), Expect = 2.8
Identities = 22/64 (34%), Positives = 30/64 (46%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSR 429
S R YD G P R+R+Y + R+ R H D +RR+ SL R++ R SR
Sbjct: 263 SRYRSDYDRGRT---PSRHRSYERSRERERERHRHRD--NRRSPSLERSYKKEYKRSGSR 317
Query: 430 EVRR 441
R
Sbjct: 318 SPSR 321
>BC016010-1|AAH16010.2| 140|Homo sapiens transmembrane protein 18
protein.
Length = 140
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 219 FATSSFDISNPSDLAQTFPS*P---AIAAFETHLEAINCLST*SYQLILNKF 73
F+ SSF +S P+ L QT + P +A F + CLS+ SY+L + F
Sbjct: 5 FSVSSFPVSIPAVLTQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHF 56
>AL137269-1|CAB70668.1| 171|Homo sapiens hypothetical protein
protein.
Length = 171
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 219 FATSSFDISNPSDLAQTFPS*P---AIAAFETHLEAINCLST*SYQLILNKF 73
F+ SSF +S P+ L QT + P +A F + CLS+ SY+L + F
Sbjct: 36 FSVSSFPVSIPAVLTQTDWTEPWLMGLATFHALCVLLTCLSSRSYRLQIGHF 87
>AB012644-1|BAA32813.1| 227|Homo sapiens TAP1N protein.
Length = 227
Score = 29.9 bits (64), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 263 RRLLEVIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHIWRPL 117
RRLL + S+ R+LS L L++ +L WP H R L + +P+
Sbjct: 174 RRLLGCLGSETRRLSLFLVLVVLSSLGRWPFHSLRAASLTGFYKMAQPI 222
>L41887-1|AAA88098.1| 238|Homo sapiens splicing factor,
arginine/serine-rich 7 protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>L22253-1|AAA35495.1| 238|Homo sapiens 9G8 splicing factor protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>L14076-1|AAA36649.1| 494|Homo sapiens pre-mRNA splicing factor
protein.
Length = 494
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQ---GRRASHEDTASR-RNFSL*RTHSTPAGR 417
S +RR Y + H R R+ H+RK+R ++SH + SR R+ S R+ S +
Sbjct: 179 SRRRRSYSRSRS-HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQ 237
Query: 418 IRSR 429
RSR
Sbjct: 238 SRSR 241
>BT007415-1|AAP36083.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQ---GRRASHEDTASR-RNFSL*RTHSTPAGR 417
S +RR Y + H R R+ H+RK+R ++SH + SR R+ S R+ S +
Sbjct: 179 SRRRRSYSRSRS-HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQ 237
Query: 418 IRSR 429
RSR
Sbjct: 238 SRSR 241
>BT006745-1|AAP35391.1| 238|Homo sapiens splicing factor,
arginine/serine-rich 7, 35kDa protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>BC022328-1|AAH22328.1| 238|Homo sapiens splicing factor,
arginine/serine-rich 7, 35kDa protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>BC017908-1|AAH17908.1| 238|Homo sapiens splicing factor,
arginine/serine-rich 7, 35kDa protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>BC017369-1|AAH17369.1| 238|Homo sapiens splicing factor,
arginine/serine-rich 7, 35kDa protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>BC002781-1|AAH02781.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQ---GRRASHEDTASR-RNFSL*RTHSTPAGR 417
S +RR Y + H R R+ H+RK+R ++SH + SR R+ S R+ S +
Sbjct: 179 SRRRRSYSRSRS-HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQ 237
Query: 418 IRSR 429
RSR
Sbjct: 238 SRSR 241
>BC000997-1|AAH00997.1| 238|Homo sapiens splicing factor,
arginine/serine-rich 7, 35kDa protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>AY513287-1|AAT08040.1| 238|Homo sapiens aging-associated protein 3
protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>AY166860-1|AAN87842.1| 238|Homo sapiens arginine/serine-rich
splicing factor 7 type B protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>AL590729-1|CAI14326.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQ---GRRASHEDTASR-RNFSL*RTHSTPAGR 417
S +RR Y + H R R+ H+RK+R ++SH + SR R+ S R+ S +
Sbjct: 179 SRRRRSYSRSRS-HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQ 237
Query: 418 IRSR 429
RSR
Sbjct: 238 SRSR 241
>AL357500-1|CAH71635.1| 494|Homo sapiens splicing factor,
arginine/serine-rich 4 protein.
Length = 494
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQ---GRRASHEDTASR-RNFSL*RTHSTPAGR 417
S +RR Y + H R R+ H+RK+R ++SH + SR R+ S R+ S +
Sbjct: 179 SRRRRSYSRSRS-HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQ 237
Query: 418 IRSR 429
RSR
Sbjct: 238 SRSR 241
>AK223444-1|BAD97164.1| 382|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 382
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQ---GRRASHEDTASR-RNFSL*RTHSTPAGR 417
S +RR Y + H R R+ H+RK+R ++SH + SR R+ S R+ S +
Sbjct: 179 SRRRRSYSRSRS-HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQ 237
Query: 418 IRSR 429
RSR
Sbjct: 238 SRSR 241
>AC074366-2|AAX93102.1| 238|Homo sapiens unknown protein.
Length = 238
Score = 29.5 bits (63), Expect = 6.6
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = +1
Query: 262 RCYDSGHAVHLPQRYRTYHTRKARQGRRASHEDTASRRNFSL*RTHSTPAGRIRSREVRR 441
RCY+ G H Y R+ + R SH + RR +S R+ S R RS RR
Sbjct: 105 RCYECGEKGHYAYDCHRYSRRRRSRSRSRSHSRSRGRR-YSRSRSRSR-GRRSRSASPRR 162
>AB209856-1|BAD93093.1| 419|Homo sapiens splicing factor,
arginine/serine-rich 4 variant protein.
Length = 419
Score = 29.5 bits (63), Expect = 6.6
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +1
Query: 250 SNKRRCYDSGHAVHLPQRYRTYHTRKARQ---GRRASHEDTASR-RNFSL*RTHSTPAGR 417
S +RR Y + H R R+ H+RK+R ++SH + SR R+ S R+ S +
Sbjct: 104 SRRRRSYSRSRS-HSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQ 162
Query: 418 IRSR 429
RSR
Sbjct: 163 SRSR 166
>Y08415-1|CAA69692.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
>X53179-1|CAA37320.1| 502|Homo sapiens precursor peptide (AA -25 to
477) protein.
Length = 502
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
>U62437-1|AAB40115.1| 502|Homo sapiens nicotinic acetylcholine
receptor beta2 subunit precursor protein.
Length = 502
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
>BC075041-1|AAH75041.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
>BC075040-1|AAH75040.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
>AL592078-3|CAI16184.1| 502|Homo sapiens cholinergic receptor,
nicotinic, beta 2 (neuronal) protein.
Length = 502
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
>AJ001935-1|CAA05108.1| 504|Homo sapiens CHRNB2 protein.
Length = 504
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
>AF077186-1|AAD45422.1| 502|Homo sapiens neuronal nicotinic
acetylcholine receptor beta 2 protein.
Length = 502
Score = 29.1 bits (62), Expect = 8.7
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -3
Query: 185 LTW-PRHFRRDRQL-LPLKHIWRPLTVCRHNLTSSF*ISSIKN 63
LTW P F +++ LP KHIW P V +N + +S N
Sbjct: 92 LTWKPEEFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSN 134
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,154,511
Number of Sequences: 237096
Number of extensions: 1329910
Number of successful extensions: 2598
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 2512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2598
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -