Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P12
(447 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 53 2e-08
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 27 0.99
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 27 0.99
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 1.7
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 26 2.3
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 5.3
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 5.3
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 25 7.0
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 25 7.0
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 7.0
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 7.0
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 25 7.0
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 24 9.3
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 9.3
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 53.2 bits (122), Expect = 2e-08
Identities = 42/140 (30%), Positives = 61/140 (43%)
Frame = +3
Query: 9 DGCITQWDXXXXXXXXXXXXXXXXXXXXMRAGRDGSLLTIGIDDTLRRAMPQDEGGVPAY 188
DG + WD M D ++TIG+DDTLR + + G A
Sbjct: 336 DGTVLSWDIGKQKAFPLVGESHTNQVMQMIMA-DDHVITIGMDDTLR--VIDIKQGCFA- 391
Query: 189 TDSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRH 368
D+ P G QP + + ED I+ TV ++ V+ S+ Y+PS+V P
Sbjct: 392 KDNVFPTGYQPIGVCSV--EDCLILVTVSDIQVLRSLTGVSTAKTIYQPSAVASHPLKSE 449
Query: 369 VAVGGGDNKVHVYTLSGGSL 428
VGG D V+++TL G L
Sbjct: 450 FCVGGEDCCVYIHTLEKGEL 469
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.5 bits (58), Expect = 0.99
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 288 IVGGKKQSSLPLQYEPS-SVTIDPKSRHVAVGGGDNKVHVYTLSG 419
I G++ S+ P ++TIDP + +A GG + V V+ ++G
Sbjct: 90 IPSGRRIKSMKAHETPVITMTIDPTNTLLATGGAEGLVKVWDIAG 134
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 27.5 bits (58), Expect = 0.99
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 346 PSTPNRGTLPSEVVIIKCMCTRCPAAPS 429
PSTP++ +PSEV I TR PS
Sbjct: 438 PSTPDKRPVPSEVSPIAIFTTRMERGPS 465
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 1.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 339 SVTIDPKSRHVAVGGGDNKVHVYTLSGGSL 428
SVTI+P + G D K+ ++ L G L
Sbjct: 622 SVTINPSRQQCISAGTDAKIRIWNLESGEL 651
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 2.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 348 IDPKSRHVAVGGGDNKVHVYTLSGGSLDA 434
+DP ++++A+G V++Y L + DA
Sbjct: 400 LDPSNKYLAIGSKSGIVNIYDLQTSNADA 428
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 5.3
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = +3
Query: 204 PLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSV--TIDPKSRHVAV 377
P G PR++D L+D+D+ + IVG + S+ T+ + V +
Sbjct: 214 PPGQLPRSIDILLDDDLVDTVKPGDRVNIVGQYRSMGSKTSGNTSATFRTVLLANNVVLL 273
Query: 378 GGGDNKVHVYTLSGGSLD 431
G NK + + GG+LD
Sbjct: 274 G---NKPGLGNVGGGALD 288
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.0 bits (52), Expect = 5.3
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +3
Query: 315 LPLQYEPSSVTIDPKSRHVAVGGGDNKVHVYTL 413
LP ++P+S+T+D + + +G + +Y +
Sbjct: 462 LPATFDPTSLTVDEEYSNFLIGSRTGSLALYNI 494
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 24.6 bits (51), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -2
Query: 290 DHRQLFNGGHDGDVLVDEVVHRTR------LRPERDGTIRVSRNTAF 168
D ++ N H G+V +DE++ R L E GT++ TAF
Sbjct: 91 DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAF 137
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 24.6 bits (51), Expect = 7.0
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +3
Query: 99 AGRDGSLLTIGIDDTLRRAMPQDEGGVP--AYTDSAIP 206
AG + S +T+G++ T A + +GG P Y S+ P
Sbjct: 33 AGLNASNITVGVNVTNTTAFSKRDGGFPDGVYDCSSFP 70
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 293 DDHRQLFNGGHDGDVLVDE 237
DD R +F G +DGD+ +E
Sbjct: 883 DDTRPVFQGANDGDISSNE 901
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 24.6 bits (51), Expect = 7.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 297 GKKQSSLPLQYEPSSVTIDPKSR 365
G + SS+PL +P+S+++D R
Sbjct: 365 GVQTSSIPLNGKPTSISLDTNDR 387
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 24.6 bits (51), Expect = 7.0
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Frame = -2
Query: 290 DHRQLFNGGHDGDVLVDEVVHRTR------LRPERDGTIRVSRNTAF 168
D ++ N H G+V +DE++ R L E GT++ TAF
Sbjct: 91 DRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAF 137
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 431 IEGAAGQRVHMHFIITTSDGNVPRFGVDGD 342
IE +G++ H F+IT + PR DGD
Sbjct: 767 IETESGKK-HQLFMITHVEAGTPRILTDGD 795
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 300 KKQSSLPLQYEPSSVTIDP 356
KKQSS P QY P + + P
Sbjct: 525 KKQSSGPFQYYPDAFSFTP 543
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,928
Number of Sequences: 5004
Number of extensions: 30372
Number of successful extensions: 116
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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