Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P12
(447 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 36 0.011
02_01_0109 - 795066-796280 32 0.24
02_03_0246 - 16807619-16808145,16808208-16808868 31 0.56
04_01_0497 - 6522998-6523669,6523684-6523716 29 1.3
02_05_0366 - 28313190-28313601,28313759-28314225,28315044-283157... 29 1.3
03_06_0713 - 35687672-35689219 29 1.7
10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022 29 2.3
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 29 2.3
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 29 2.3
09_06_0222 - 21655236-21655841 28 3.0
09_04_0514 - 18236061-18237392 28 3.0
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18... 28 3.0
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 28 3.9
06_03_1221 - 28514952-28518152 28 3.9
06_03_0148 - 17252967-17253296 27 5.2
09_06_0328 + 22365308-22365415,22365743-22366018,22366166-223664... 27 6.9
03_02_0258 + 6915645-6915785,6915950-6916020,6916157-6916337,691... 27 6.9
03_01_0225 + 1784211-1784324,1784398-1784668,1784992-1785248,178... 27 6.9
02_04_0590 - 24154366-24155742 27 6.9
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 27 9.1
10_08_0233 - 16061182-16061714,16062765-16063578 27 9.1
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 27 9.1
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 27 9.1
>03_05_1065 +
30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 36.3 bits (80), Expect = 0.011
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +3
Query: 348 IDPKSRHVAVGGGDNKVHVYTLSGG 422
I+P RH+A GG D VH+Y L GG
Sbjct: 330 IEPCGRHLATGGQDGMVHIYDLQGG 354
>02_01_0109 - 795066-796280
Length = 404
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 339 SVTIDPKSRHVAVGGGDNKVHVYTLSGGSLDAGC 440
S+ DP RH+A GG K+ +Y ++ S A C
Sbjct: 75 SLDFDPTGRHLATGGIARKIRIYRVAEPSSPAAC 108
>02_03_0246 - 16807619-16808145,16808208-16808868
Length = 395
Score = 30.7 bits (66), Expect = 0.56
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Frame = -3
Query: 322 SGRLDCFLPPTITVNSLTVATMVTSSSMRW---------SIARGCDPSGMALSV*AGTPP 170
+ R + F P + + TVA S SM W ++R C S MA PP
Sbjct: 59 ANRYELFYQPGDAI-AFTVAEHTASVSMSWPRMTRGRLPGLSRSCRSSRMAARCWPCRPP 117
Query: 169 SSCGIARLSVSSMPMVRSEPSLPARMPLT 83
CG R + S + P AR P T
Sbjct: 118 CCCGRRRRAASPSASPCTTPPATARAPRT 146
>04_01_0497 - 6522998-6523669,6523684-6523716
Length = 234
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 297 GKKQSSLPLQYEPSSVTIDPKSRHVAVGGGDNKVHVY-TLSGGSLDAGCGA 446
G L +++ SS+ +DP + VGGG+NK + L+G + D G G+
Sbjct: 58 GGVHRELQIRWWLSSIALDPVA--AVVGGGENKTRLLPPLNGSAEDGGKGS 106
>02_05_0366 -
28313190-28313601,28313759-28314225,28315044-28315782,
28316548-28316615,28316693-28316757,28316922-28320162,
28320239-28320301,28320756-28320824,28321020-28321055,
28322035-28322280,28322531-28322569,28322695-28322816,
28322921-28323004,28323100-28323235,28323486-28323535,
28323620-28323756,28323863-28323951,28324847-28324954,
28325080-28325163,28325841-28325888,28326036-28326153,
28328262-28328347
Length = 2168
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/62 (24%), Positives = 27/62 (43%)
Frame = +3
Query: 138 DTLRRAMPQDEGGVPAYTDSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSL 317
+ + + P D V D LG +P+ +H IDED + + + + ++ L
Sbjct: 213 ENINASSPTDVDNVEIDDDYNSSLGEEPKDDEHTIDEDEAQITEAERNEELAALQAEADL 272
Query: 318 PL 323
PL
Sbjct: 273 PL 274
>03_06_0713 - 35687672-35689219
Length = 515
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 436 PASREPPDSVYTCTLLSPPPTATCLDLGSMVTELGSY 326
P SR P S TL + PP AT L ++++LGS+
Sbjct: 29 PPSRRHPHSGAALTLRAAPPPATQPTLDRVLSDLGSH 65
>10_02_0155 + 5937974-5939419,5939678-5939867,5940895-5941022
Length = 587
Score = 28.7 bits (61), Expect = 2.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = -2
Query: 254 DVLVDEVVHRTRLRPERDGTIRVSRNTAF-ILRHCPPERVV---DADGEERAVPARTHAV 87
++ V EVV R R + DG + R+T + I+ HC P V + G A+P R
Sbjct: 349 ELTVQEVVRRRRSAVDMDGVHVMGRDTFYQIMLHCLPSGDVSPEELQGPPSALPFRVLPW 408
Query: 86 DL-VPVTLTHH 57
D V TL H
Sbjct: 409 DAEVHATLFVH 419
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -1
Query: 423 SRRTACTHALYYHHLRRQRASIW 355
SR+ TH Y+HHL++QRA+ W
Sbjct: 356 SRKKRPTHQ-YHHHLQQQRANPW 377
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 28.7 bits (61), Expect = 2.3
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +3
Query: 135 DDTLRRAMPQDEGG--VPAYTDSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQ 308
D+ + A P DE ++TDS LG+ D ++ + TI+ V L V++G +
Sbjct: 61 DNYMTYAFPHDELKPLTKSFTDSLSELGNLNNVNDDIVSSENTIIRKVDSL-VVLGNLTE 119
Query: 309 SSLPLQYEPSSVTIDPKSR 365
+ + ++T D +R
Sbjct: 120 FERGVLWLSENLTFDVDAR 138
>09_06_0222 - 21655236-21655841
Length = 201
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 226 ARGCDPSGMALSV*AGTPPSSC-GIARLSVSSMPMV 122
+R C+PS A+ PP+ C G+ R ++ S+P V
Sbjct: 54 SRLCNPSSFAVEAEEAMPPAPCKGLKRKALLSLPTV 89
>09_04_0514 - 18236061-18237392
Length = 443
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 297 GKKQSSLPLQYEPSSVTIDPKSRHVAVGGGDNKVHVYTLSGGSL 428
G +L L S+T+D + + GG D +VHV +LS ++
Sbjct: 237 GSHLRTLTLPCTAFSLTLDHLAARLFAGGSDGRVHVASLSPAAI 280
>02_01_0031 -
187798-187887,187996-188179,188468-188640,188917-189399,
189557-190213,190821-190837,191501-192041
Length = 714
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 294 GGKKQSSLPLQYEPSSVTIDPKSRHVAVGGGD 389
G KQ+SLP + PS + + S + GGGD
Sbjct: 154 GRMKQASLPRTFPPSCLILPITSFSILCGGGD 185
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 134 DADGEERA--VPARTHAVDLVPVTLTHHVLTFTSLNVPLGDT 15
D D +E A V ++ VD++ VT ++H+L N P G T
Sbjct: 108 DGDAKENAARVAIKSILVDIIAVTRSNHMLESIRSNKPTGTT 149
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 27.9 bits (59), Expect = 3.9
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -3
Query: 418 PDSVYTCTLLSPPPTATCLDLGSMVTELGSYCSGRLDCFLPPTITVNSLTVATMVTSSSM 239
P S+Y+CT + + L +G + E+G+ L F SLTV + V S M
Sbjct: 366 PPSIYSCTAMKALRVSNNLMVGQISPEIGNL--KELQFF--------SLTVNSFVNISGM 415
Query: 238 RWSIARGC 215
W++ +GC
Sbjct: 416 FWNL-KGC 422
>06_03_0148 - 17252967-17253296
Length = 109
Score = 27.5 bits (58), Expect = 5.2
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +3
Query: 204 PLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRHV 371
P ++ + LI ED +V +E V G PL+ EP +T+ +S ++
Sbjct: 8 PARAKHHRVPSLIPEDFAVVDFKEETIVSRGENTTGRQPLREEPQKMTVMEESHNI 63
>09_06_0328 +
22365308-22365415,22365743-22366018,22366166-22366417,
22366542-22366939,22367028-22368021,22368199-22368409,
22368515-22368749,22368874-22368996,22369190-22369310,
22369416-22369625
Length = 975
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 339 SVTIDPKSRHVAVGGGDNKVHVYTLSGGSLD 431
S+ I P A GGGD K+ ++++ + D
Sbjct: 18 SIDIQPGGIRFATGGGDQKIRIWSMKSVAKD 48
>03_02_0258 +
6915645-6915785,6915950-6916020,6916157-6916337,
6916461-6916643,6916753-6916884,6916986-6917084,
6917381-6917593,6917746-6917858,6917959-6918073
Length = 415
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 120 LTIGIDDTLRRAMPQDEGGVPAYTDSAIPLGSQ 218
+ + ++D++ RAMP GGV T+ A L +Q
Sbjct: 242 INLVVEDSIHRAMPGGTGGVKTITNYAPVLKAQ 274
>03_01_0225 +
1784211-1784324,1784398-1784668,1784992-1785248,
1785338-1785450,1791599-1791746,1791943-1792080,
1792448-1792525
Length = 372
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 304 FLPPTITVNSLTVATMVTSSSMRWSIAR 221
FLP +I T +T TSSS W I R
Sbjct: 12 FLPSSIRFAVATTSTSTTSSSSSWRIKR 39
>02_04_0590 - 24154366-24155742
Length = 458
Score = 27.1 bits (57), Expect = 6.9
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 408 CTHALYYHHLRRQRASIWGRW*LNSARTAAA 316
C ALYY L R RA+ WG + + R AA+
Sbjct: 91 CREALYYGLLDRVRAARWGPFDGDRLRLAAS 121
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 354 PKSRHVAVGGGDNKVHVYTLSGGSL 428
P R + GG DN V ++ L+ G L
Sbjct: 158 PDGRWIVSGGSDNSVKIWDLTAGKL 182
>10_08_0233 - 16061182-16061714,16062765-16063578
Length = 448
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = -2
Query: 176 TAFILRHCPPERVVDADGEERAVPARTHAVDLVPVTLTHH 57
TAF R C P R + R AR A+ L P T H
Sbjct: 55 TAFRCRWCHPHRATRINDLSRRCQARLLALPLRPTAATGH 94
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -3
Query: 214 DPSGMALSV*AGTPPSSCGIARLSVSSMPMVRSEPSLPAR 95
D S AL TPP AR VS++ +R +PSL AR
Sbjct: 56 DSSEFALPPSGPTPPPPPQQARNPVSALRKLRFDPSLRAR 95
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 366 HVAVGGGDNKVHVYTLSGGSLD 431
H+A+ G DNK+H+ SG D
Sbjct: 1343 HIALLGADNKMHIIQESGDDAD 1364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,551,796
Number of Sequences: 37544
Number of extensions: 304081
Number of successful extensions: 1149
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1149
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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