Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P12
(447 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 72 2e-13
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 72 2e-13
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 72 2e-13
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 52 2e-07
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 33 0.072
Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical pr... 32 0.17
Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical pr... 32 0.17
AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical ... 32 0.22
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 29 1.5
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 1.5
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 1.5
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 29 1.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 1.5
Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical p... 28 2.7
L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid desa... 27 6.2
AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical ... 27 6.2
Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical pr... 27 8.2
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 8.2
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 8.2
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 8.2
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 27 8.2
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 71.7 bits (168), Expect = 2e-13
Identities = 43/140 (30%), Positives = 62/140 (44%)
Frame = +3
Query: 9 DGCITQWDXXXXXXXXXXXXXXXXXXXXMRAGRDGSLLTIGIDDTLRRAMPQDEGGVPAY 188
+G I WD ++ G L T+ DD L+ +P GV +
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK-VVPAGGSGVDSS 403
Query: 189 TDSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRH 368
A L SQP + D D+ + A K + + GK + +P+ Y S V + +
Sbjct: 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL-TEVPISYNSSCVALSNDKQF 462
Query: 369 VAVGGGDNKVHVYTLSGGSL 428
VAVGG D+KVHVY LSG S+
Sbjct: 463 VAVGGQDSKVHVYKLSGASV 482
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 71.7 bits (168), Expect = 2e-13
Identities = 43/140 (30%), Positives = 62/140 (44%)
Frame = +3
Query: 9 DGCITQWDXXXXXXXXXXXXXXXXXXXXMRAGRDGSLLTIGIDDTLRRAMPQDEGGVPAY 188
+G I WD ++ G L T+ DD L+ +P GV +
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK-VVPAGGSGVDSS 403
Query: 189 TDSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRH 368
A L SQP + D D+ + A K + + GK + +P+ Y S V + +
Sbjct: 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL-TEVPISYNSSCVALSNDKQF 462
Query: 369 VAVGGGDNKVHVYTLSGGSL 428
VAVGG D+KVHVY LSG S+
Sbjct: 463 VAVGGQDSKVHVYKLSGASV 482
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 71.7 bits (168), Expect = 2e-13
Identities = 43/140 (30%), Positives = 62/140 (44%)
Frame = +3
Query: 9 DGCITQWDXXXXXXXXXXXXXXXXXXXXMRAGRDGSLLTIGIDDTLRRAMPQDEGGVPAY 188
+G I WD ++ G L T+ DD L+ +P GV +
Sbjct: 345 EGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLK-VVPAGGSGVDSS 403
Query: 189 TDSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRH 368
A L SQP + D D+ + A K + + GK + +P+ Y S V + +
Sbjct: 404 KAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL-TEVPISYNSSCVALSNDKQF 462
Query: 369 VAVGGGDNKVHVYTLSGGSL 428
VAVGG D+KVHVY LSG S+
Sbjct: 463 VAVGGQDSKVHVYKLSGASV 482
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 52.0 bits (119), Expect = 2e-07
Identities = 38/137 (27%), Positives = 61/137 (44%)
Frame = +3
Query: 9 DGCITQWDXXXXXXXXXXXXXXXXXXXXMRAGRDGSLLTIGIDDTLRRAMPQDEGGVPAY 188
+G IT W+ + +G L T+G DD L+ + G ++
Sbjct: 343 EGHITTWEISSGTSSRKSPHTTMITGA--QTSSNGDLFTVGWDDQLK--ITDGSGDTKSF 398
Query: 189 TDSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRH 368
L SQP ++ + +D+ IVA K + V+ G + P+++ + V +
Sbjct: 399 K-----LPSQPCGLE--VSDDLAIVACYKHVVVLSRGTPTEN-PIEFHSTCVAFCAEKSL 450
Query: 369 VAVGGGDNKVHVYTLSG 419
VAVGG D KVHVY L+G
Sbjct: 451 VAVGGKDAKVHVYKLNG 467
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 33.5 bits (73), Expect = 0.072
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Frame = -3
Query: 394 LLSPPPTAT-CLDLGSMVTELGSYCSGRLDC-FLPPTITVN-SLTVATMVTS--SSMRWS 230
L +P T+T CLD+ + +GS SG+ L T+T LT +TS +
Sbjct: 38 LSTPATTSTSCLDIQNSTPIIGSLASGKSQTPILTATMTPQIGLTGLGSLTSLPPELLLQ 97
Query: 229 IARGCDPSGMALSV*AGTPPSSCGIARLSVSSMPMVRSEPSLPARMPLT 83
AR D + +V + PSS + S S V S P+LP PLT
Sbjct: 98 FAR-LDGFNLLPAVGSPAIPSSSSCSEPSTSQASTVVSAPTLPPPSPLT 145
>Z49889-5|CAA90070.1| 2207|Caenorhabditis elegans Hypothetical
protein W07E11.1 protein.
Length = 2207
Score = 32.3 bits (70), Expect = 0.17
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 320 RQTRLFLTTDDHRQLFNGGHDGDVLVDEVVHRTRLRPER 204
R R +LT DDH L + D+ +++VV + RL+P R
Sbjct: 409 RPARYYLTDDDHLYLSSEVGVNDIPIEKVVKKDRLKPGR 447
>Z49868-5|CAA90032.1| 2207|Caenorhabditis elegans Hypothetical
protein W07E11.1 protein.
Length = 2207
Score = 32.3 bits (70), Expect = 0.17
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 320 RQTRLFLTTDDHRQLFNGGHDGDVLVDEVVHRTRLRPER 204
R R +LT DDH L + D+ +++VV + RL+P R
Sbjct: 409 RPARYYLTDDDHLYLSSEVGVNDIPIEKVVKKDRLKPGR 447
>AL022270-2|CAB63433.2| 952|Caenorhabditis elegans Hypothetical
protein C26G2.2 protein.
Length = 952
Score = 31.9 bits (69), Expect = 0.22
Identities = 26/84 (30%), Positives = 38/84 (45%)
Frame = +3
Query: 192 DSAIPLGSQPRAMDHLIDEDVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRHV 371
+ I LG A+D ++TIVA V V G + + ++Y P+ V+IDP + V
Sbjct: 137 EKTISLGLSDNAIDGETAVELTIVAPVHNTNVRFVG---AEILIKYGPNVVSIDPNFQKV 193
Query: 372 AVGGGDNKVHVYTLSGGSLDAGCG 443
V + T S GSL G
Sbjct: 194 IVYNDRYSYCLDTKSPGSLHVTFG 217
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 240 IDEDVTIVATVKELTVI-VGGKKQSSLPLQYEPSSVTIDPKSRHVAVGGGDNKVHVYTLS 416
IDE + ++ K L+ + G S L++EP ++ ++ +GG D + +YT
Sbjct: 209 IDEIMAVIDWNKTLSFYSLDGTFIESKNLEFEPHCISYCLNGEYLLIGGSDKILKIYTRK 268
Query: 417 G 419
G
Sbjct: 269 G 269
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
K07E12.1b protein.
Length = 12268
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 108 DGSLLTIGIDDTLRRAMPQDEGGVPAY---TDSAIPLGSQPRAMDHLIDEDVTIV 263
DG + + +DD+ +A P DE G AY PLG+ + + +D TI+
Sbjct: 10654 DGHYVLVPVDDSTIKAFPTDESGNVAYPITRPDGTPLGTD--SSGSFVTDDGTII 10706
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 108 DGSLLTIGIDDTLRRAMPQDEGGVPAY---TDSAIPLGSQPRAMDHLIDEDVTIV 263
DG + + +DD+ +A P DE G AY PLG+ + + +D TI+
Sbjct: 10699 DGHYVLVPVDDSTIKAFPTDESGNVAYPITRPDGTPLGTD--SSGSFVTDDGTII 10751
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 240 IDEDVTIVATVKELTVI-VGGKKQSSLPLQYEPSSVTIDPKSRHVAVGGGDNKVHVYTLS 416
IDE + ++ K L+ + G S L++EP ++ ++ +GG D + +YT
Sbjct: 209 IDEIMAVIDWNKTLSFYSLDGTFIESKNLEFEPHCISYCLNGEYLLIGGSDKILKIYTRK 268
Query: 417 G 419
G
Sbjct: 269 G 269
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 108 DGSLLTIGIDDTLRRAMPQDEGGVPAY---TDSAIPLGSQPRAMDHLIDEDVTIV 263
DG + + +DD+ +A P DE G AY PLG+ + + +D TI+
Sbjct: 10699 DGHYVLVPVDDSTIKAFPTDESGNVAYPITRPDGTPLGTD--SSGSFVTDDGTII 10751
>Z74031-11|CAD54138.1| 474|Caenorhabditis elegans Hypothetical
protein F32D8.12a protein.
Length = 474
Score = 28.3 bits (60), Expect = 2.7
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = -3
Query: 385 PPPTATCLDLGSMVTELGSYCSGRLDCFLPPTITVNSLTVATMVTSSSMRWSIARGCDPS 206
P T T L+ GSM T LG C P + + V S+ R ++ S
Sbjct: 80 PFGTGTGLEGGSMST-LGGICISTQQIIGDPVLREQDFVCS--VKPSTTRIALNDAIKNS 136
Query: 205 GMALSV*AGTPPSSCGIARLSVSSMPMVR 119
G+ V G S CG+ S S +R
Sbjct: 137 GLFFPVDPGADASVCGMVATSASGTNAIR 165
>L41807-1|AAA67369.1| 402|Caenorhabditis elegans fatty acid
desaturase protein.
Length = 402
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -2
Query: 257 GDVLVDEVVHRTRLRPERDGTIRVSRNTAFILRHCPPERVVDADGEERAVPARTHAVDLV 78
GDVLVD R L E++ V+ NT P ++ D RA+PA DLV
Sbjct: 18 GDVLVDA---RASLE-EKEAPRDVNANTKQATTEEPRIQLPTVDAFRRAIPAHCFERDLV 73
Query: 77 PVTLTHHVLTFTSLNV 30
++ + V F +L +
Sbjct: 74 K-SIRYLVQDFAALTI 88
>AL132951-8|CAC44309.1| 402|Caenorhabditis elegans Hypothetical
protein Y67H2A.8 protein.
Length = 402
Score = 27.1 bits (57), Expect = 6.2
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -2
Query: 257 GDVLVDEVVHRTRLRPERDGTIRVSRNTAFILRHCPPERVVDADGEERAVPARTHAVDLV 78
GDVLVD R L E++ V+ NT P ++ D RA+PA DLV
Sbjct: 18 GDVLVDA---RASLE-EKEAPRDVNANTKQATTEEPRIQLPTVDAFRRAIPAHCFERDLV 73
Query: 77 PVTLTHHVLTFTSLNV 30
++ + V F +L +
Sbjct: 74 K-SIRYLVQDFAALTI 88
>Z48809-2|CAA88747.1| 406|Caenorhabditis elegans Hypothetical
protein T01E8.4 protein.
Length = 406
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 309 SSLPLQYEPSSVTIDPKSRHVAVGGGDNKV 398
+S L EP+ P SR +A+G GD+ +
Sbjct: 364 ASHELAAEPAKFDYSPSSRTLAIGNGDSSI 393
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 26.6 bits (56), Expect = 8.2
Identities = 28/113 (24%), Positives = 43/113 (38%)
Frame = -3
Query: 445 APHPASREPPDSVYTCTLLSPPPTATCLDLGSMVTELGSYCSGRLDCFLPPTITVNSLTV 266
+P P+S+ P + + T P T++ SM + P T +S T
Sbjct: 388 SPQPSSQSPAPNTGSTT---PSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTG 444
Query: 265 ATMVTSSSMRWSIARGCDPSGMALSV*AGTPPSSCGIARLSVSSMPMVRSEPS 107
+T T S ++ PSG +L + S S S M + SEPS
Sbjct: 445 STGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPS 497
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 26.6 bits (56), Expect = 8.2
Identities = 28/113 (24%), Positives = 43/113 (38%)
Frame = -3
Query: 445 APHPASREPPDSVYTCTLLSPPPTATCLDLGSMVTELGSYCSGRLDCFLPPTITVNSLTV 266
+P P+S+ P + + T P T++ SM + P T +S T
Sbjct: 595 SPQPSSQSPAPNTGSTT---PSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTG 651
Query: 265 ATMVTSSSMRWSIARGCDPSGMALSV*AGTPPSSCGIARLSVSSMPMVRSEPS 107
+T T S ++ PSG +L + S S S M + SEPS
Sbjct: 652 STGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPS 704
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 26.6 bits (56), Expect = 8.2
Identities = 28/113 (24%), Positives = 43/113 (38%)
Frame = -3
Query: 445 APHPASREPPDSVYTCTLLSPPPTATCLDLGSMVTELGSYCSGRLDCFLPPTITVNSLTV 266
+P P+S+ P + + T P T++ SM + P T +S T
Sbjct: 595 SPQPSSQSPAPNTGSTT---PSQTSSQSPSPSMNPSSSTPTGSSQSTITPEGSTASSPTG 651
Query: 265 ATMVTSSSMRWSIARGCDPSGMALSV*AGTPPSSCGIARLSVSSMPMVRSEPS 107
+T T S ++ PSG +L + S S S M + SEPS
Sbjct: 652 STGSTFSVATEVTSQSTVPSGSSLGTQSTNSSPSPSSLSPSTSGMSTLTSEPS 704
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +3
Query: 222 RAMDHLIDE---DVTIVATVKELTVIVGGKKQSSLPLQYEPSSVTIDPKSRHV 371
R+ H DE DVTI++T + + I+ K Q + LQ PSS + KS +
Sbjct: 1536 RSTWHFFDEQHKDVTILSTSPQGSQILQLKFQEGVDLQLIPSSPHFELKSSKI 1588
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,957,919
Number of Sequences: 27780
Number of extensions: 199730
Number of successful extensions: 709
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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