Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P11
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.70 
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    28   0.92 
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   1.6  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   2.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   4.9  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    25   8.6  
SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit L28...    25   8.6  

>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 419 EYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSES 517
           EY + + APL QS +   +P+IG +  +A+  +
Sbjct: 27  EYGEVETAPLSQSSWIYRRPRIGRFKSLAYGSA 59


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 92  IGHV-HSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQV 199
           I H+ H KS L+    ++   +N HN+R Q L K +V
Sbjct: 64  IAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEV 100


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +2

Query: 341 ENLYWYSTTDSTYKLNVDNAMESWFNEYKDYKYAPLKQSDFDKS 472
           +N YW  TTDS ++L V+       NE ++     L++ DF+K+
Sbjct: 356 KNTYWLYTTDSLHELVVN-------NETREASLVFLEKGDFEKA 392


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 468 LSKSLCFKGAXXXXXXXLNQLSIALSTFSLYVLSVVEYQ 352
           L  S+ F+G+       LNQL+I L++ S Y  S + ++
Sbjct: 15  LRSSIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFE 53


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +2

Query: 158 GHNYRRQLLAKGQVSGHPAATE 223
           G N+RRQLL  G+  G  AA+E
Sbjct: 854 GDNWRRQLLENGKSFGLEAASE 875


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 461 FDKSK-PKIGHYTQMAWSESTHVGCAVLQTQDRQWNKFYVVCNYGPA 598
           F  SK P  G++ Q+ ++E +    AVL       + F V C Y PA
Sbjct: 208 FTPSKGPISGNWLQLTYAEPSSAAKAVLSNGMLINDSFMVGCIYSPA 254


>SPBC14C8.10 |mrpl24||mitochondrial ribosomal protein subunit
           L28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 176

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +2

Query: 413 FNEYKDYKYAPLKQSDFDKSKPKIGHYTQMAWSESTH 523
           F++++   Y   K    +   PK GH T+  W  + H
Sbjct: 24  FSKFQQNLYGGSKTEAGNNKIPKFGHKTRRVWIPNGH 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,480
Number of Sequences: 5004
Number of extensions: 54387
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)