Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P10
(445 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88181-2|AAB42303.1| 491|Caenorhabditis elegans Dnaj domain (pr... 134 2e-32
AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain (... 125 2e-29
Z47356-7|CAD31695.1| 249|Caenorhabditis elegans Hypothetical pr... 69 2e-12
U00058-4|AAD31932.3| 249|Caenorhabditis elegans Dnaj domain (pr... 65 2e-11
Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical pr... 59 1e-09
U80451-1|AAB37835.1| 591|Caenorhabditis elegans Dnaj domain (pr... 59 2e-09
Z66513-5|CAA91334.1| 331|Caenorhabditis elegans Hypothetical pr... 58 3e-09
Z36238-2|CAA85274.1| 378|Caenorhabditis elegans Hypothetical pr... 52 2e-07
U40415-10|AAK39254.1| 215|Caenorhabditis elegans Dnaj domain (p... 51 4e-07
U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain (p... 51 4e-07
L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain (pr... 50 6e-07
L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain (pr... 50 6e-07
AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain (... 50 8e-07
Z73102-3|CAA97409.1| 337|Caenorhabditis elegans Hypothetical pr... 48 3e-06
AF022982-4|AAB69938.1| 296|Caenorhabditis elegans Dnaj domain (... 48 3e-06
Z81113-2|CAB03279.1| 510|Caenorhabditis elegans Hypothetical pr... 47 5e-06
Z73102-15|CAA97416.1| 401|Caenorhabditis elegans Hypothetical p... 47 7e-06
Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical pr... 46 1e-05
Z54216-2|CAA90945.1| 242|Caenorhabditis elegans Hypothetical pr... 44 5e-05
AL032657-15|CAA21734.1| 788|Caenorhabditis elegans Hypothetical... 42 2e-04
Z70284-16|CAE17884.1| 155|Caenorhabditis elegans Hypothetical p... 33 0.093
Z81030-9|CAB02713.1| 191|Caenorhabditis elegans Hypothetical pr... 29 1.5
U55857-8|AAA98034.1| 145|Caenorhabditis elegans Dnaj domain (pr... 29 1.5
AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical ... 29 1.5
Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical p... 28 3.5
U00032-11|AAA50630.1| 189|Caenorhabditis elegans Hypothetical p... 27 4.6
U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate rece... 27 8.1
AF318608-1|AAK01096.1| 409|Caenorhabditis elegans ionotropic gl... 27 8.1
AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophi... 27 8.1
>U88181-2|AAB42303.1| 491|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 7 protein.
Length = 491
Score = 134 bits (325), Expect = 2e-32
Identities = 69/105 (65%), Positives = 76/105 (72%), Gaps = 6/105 (5%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDE-KKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
GVKR A+K+EITKAYRK AQKWHPDN+ +E KK AEKKFIDIAAAKEVL D +KR FD
Sbjct: 385 GVKRNASKREITKAYRKLAQKWHPDNFSDEEEKKKAEKKFIDIAAAKEVLQDEEKRRQFD 444
Query: 185 SGTDPLDPEAQRAGG--HGG---PFNNPFHHFQHGSPFQFKFHFN 304
G DPLDPEAQR GG HGG F + FHHF G + F FN
Sbjct: 445 QGVDPLDPEAQRQGGGHHGGFGHGFPHGFHHFGGGGGGEHSFKFN 489
>AC024811-1|AAF60776.1| 494|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 28 protein.
Length = 494
Score = 125 bits (301), Expect = 2e-29
Identities = 61/93 (65%), Positives = 73/93 (78%), Gaps = 1/93 (1%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGD-EKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
GV+R ANK+EITKAYRK AQKWHPDN+ + EKK AEKKFIDIAAAKEVL++ +KR FD
Sbjct: 386 GVRRNANKREITKAYRKMAQKWHPDNFQDEKEKKKAEKKFIDIAAAKEVLSNEEKRRAFD 445
Query: 185 SGTDPLDPEAQRAGGHGGPFNNPFHHFQHGSPF 283
+G DPLD EA R GG GG ++ FH+F +PF
Sbjct: 446 NGQDPLDSEAGRGGGGGGG-SHGFHNFHGFNPF 477
>Z47356-7|CAD31695.1| 249|Caenorhabditis elegans Hypothetical
protein T15H9.7 protein.
Length = 249
Score = 68.9 bits (161), Expect = 2e-12
Identities = 37/86 (43%), Positives = 53/86 (61%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 187
GV + AN +I KAYRK A++ HPD DE +A +KF D+++A EVL+D +KRAM+D
Sbjct: 30 GVAKNANANQIKKAYRKLAKELHPDRNQDDE--MANEKFQDLSSAYEVLSDKEKRAMYDR 87
Query: 188 GTDPLDPEAQRAGGHGGPFNNPFHHF 265
+ + GG GG ++PF F
Sbjct: 88 HG---EEGVAKMGGGGGGGHDPFSSF 110
>U00058-4|AAD31932.3| 249|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 24 protein.
Length = 249
Score = 64.9 bits (151), Expect = 2e-11
Identities = 40/93 (43%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDE-KKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
G+ T++ EI KAYRK A KWHPD + D+ K+ AE+KF IA A E+LTD KRA D
Sbjct: 13 GISSTSDDVEIKKAYRKLALKWHPDKHTDDKSKEEAEQKFKKIAQAYEILTDKKKRADLD 72
Query: 185 SGTDPLDPEAQRAGGHGGPFNNPFHHFQHGSPF 283
T+ +P R G + H SPF
Sbjct: 73 R-TE--NPGLHRRRSTPGGMHRMHSHDMFRSPF 102
>Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical
protein F39B2.10 protein.
Length = 402
Score = 59.3 bits (137), Expect = 1e-09
Identities = 40/88 (45%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPD-NYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
GVK A+ E+ KAYRK A K+HPD N G E +F I+ A EVL+D KR ++D
Sbjct: 12 GVKPDASDNELKKAYRKMALKFHPDKNPDGAE------QFKQISQAYEVLSDEKKRQIYD 65
Query: 185 SGTDPLDPEAQRAGGHGGP-FNNPFHHF 265
G + EA + GG GG F+NPF F
Sbjct: 66 QGGE----EALQGGGGGGEGFHNPFDVF 89
>U80451-1|AAB37835.1| 591|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 9 protein.
Length = 591
Score = 58.8 bits (136), Expect = 2e-09
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 11 VKRTANKQEITKAYRKAAQKWHPDNY-HGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 187
V + A EI KAYRK +HPD + DEKK AE+ F+ + A EVL DP +RA++D+
Sbjct: 33 VPKDATDDEIIKAYRKRCLMFHPDRFVDNDEKKDAERVFVKLRRAHEVLLDPKQRAIYDA 92
Query: 188 -GTDPLDPE 211
G LD +
Sbjct: 93 LGVQGLDTQ 101
>Z66513-5|CAA91334.1| 331|Caenorhabditis elegans Hypothetical
protein F54D5.8 protein.
Length = 331
Score = 58.0 bits (134), Expect = 3e-09
Identities = 33/78 (42%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 187
G+ + A EI KAYRK A K+HPD +++ AE KF +IA A +VL+D K+ ++D
Sbjct: 10 GISKGATDDEIKKAYRKMALKYHPDK---NKEAGAENKFKEIAEAYDVLSDDKKKKIYDQ 66
Query: 188 -GTDPLDPEAQRAGGHGG 238
G + L AGG GG
Sbjct: 67 FGEEGLKEGGPGAGGGGG 84
>Z36238-2|CAA85274.1| 378|Caenorhabditis elegans Hypothetical
protein R74.4 protein.
Length = 378
Score = 51.6 bits (118), Expect = 2e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
GV++ A++ EI AYRK A K+HPD D A+++F ++ A VL+DP+KR +D
Sbjct: 23 GVEKMASEAEIKSAYRKLALKYHPDRNPNDAH--AQEEFKKVSIAYSVLSDPNKRRQYD 79
>U40415-10|AAK39254.1| 215|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 14 protein.
Length = 215
Score = 50.8 bits (116), Expect = 4e-07
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPD-NYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
G+++ A EI KAYRK A ++HPD N GD +K + F +I A VL++P+KR ++D
Sbjct: 44 GIQKNATDDEIKKAYRKLALRYHPDKNLDGDPEK--TEMFKEINYANAVLSNPNKRRVYD 101
>U29488-10|AAK93843.1| 813|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 8 protein.
Length = 813
Score = 50.8 bits (116), Expect = 4e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
G+ R A+ +EI AY+ A++WHPD DE A +F++IA A EVL+DP ++ +D
Sbjct: 28 GISRRASAKEIKSAYKSLAREWHPDK-RKDE--AASGRFMEIAEAYEVLSDPLRKERYD 83
>L12018-4|AAK68342.1| 456|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform a
protein.
Length = 456
Score = 50.4 bits (115), Expect = 6e-07
Identities = 35/90 (38%), Positives = 51/90 (56%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 187
GV + ++ + I KAY + A+K+HPD ++ K A+ KF +I+ A EVL+D KR +D+
Sbjct: 50 GVDKKSDAKAIKKAYFQLAKKYHPD---VNKTKEAQTKFQEISEAYEVLSDDTKRQEYDA 106
Query: 188 GTDPLDPEAQRAGGHGGPFNNPFHHFQHGS 277
P AGG GG FHH HG+
Sbjct: 107 YGSGGGP----AGGRGGA--GGFHH--HGN 128
>L12018-3|AAK68343.1| 446|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 10, isoform b
protein.
Length = 446
Score = 50.4 bits (115), Expect = 6e-07
Identities = 35/90 (38%), Positives = 51/90 (56%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 187
GV + ++ + I KAY + A+K+HPD ++ K A+ KF +I+ A EVL+D KR +D+
Sbjct: 50 GVDKKSDAKAIKKAYFQLAKKYHPD---VNKTKEAQTKFQEISEAYEVLSDDTKRQEYDA 106
Query: 188 GTDPLDPEAQRAGGHGGPFNNPFHHFQHGS 277
P AGG GG FHH HG+
Sbjct: 107 YGSGGGP----AGGRGGA--GGFHH--HGN 128
>AF016428-7|AAB65361.1| 439|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 19 protein.
Length = 439
Score = 50.0 bits (114), Expect = 8e-07
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Frame = +2
Query: 11 VKRTANKQEITKAYRKAAQKWHPDNY--HGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
V+ A++ +I K+Y K A+++HPD HGD KF +I+ A EVL+ P+KR ++D
Sbjct: 20 VRPDASQADIKKSYFKLAKEYHPDKNPDHGD-------KFKEISFAYEVLSSPEKRRLYD 72
Query: 185 S-GTDPLDPEAQRAGGHGGPF-NNPFHHFQHGS 277
+ G + + + AGG GG F F HF G+
Sbjct: 73 ARGLEGV--QGGGAGGGGGGFPGGLFSHFFGGA 103
>Z73102-3|CAA97409.1| 337|Caenorhabditis elegans Hypothetical
protein B0035.2 protein.
Length = 337
Score = 48.0 bits (109), Expect = 3e-06
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +2
Query: 26 NKQEITKAYRKAAQKWHPDNY-HGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSGTDPL 202
+KQ++ KAYR A+K HPD + +EK LAE++F IA A E L D + + +D D
Sbjct: 49 DKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP 108
Query: 203 D 205
D
Sbjct: 109 D 109
>AF022982-4|AAB69938.1| 296|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 22 protein.
Length = 296
Score = 48.0 bits (109), Expect = 3e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +2
Query: 11 VKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 187
+++ +EI KAYR KWHPD + D K+ AE++FI+ A + L D +KR +D+
Sbjct: 15 LEKGCTDKEIQKAYRAQCLKWHPDK-NLDNKEEAERRFIEAKEAFDFLYDKEKREEYDN 72
>Z81113-2|CAB03279.1| 510|Caenorhabditis elegans Hypothetical
protein T03F6.2 protein.
Length = 510
Score = 47.2 bits (107), Expect = 5e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Frame = +2
Query: 11 VKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
V+R A+ +I K YRK A KWHPD + D + ++F + AA +VL+DP +R +D
Sbjct: 35 VERDADDDKIKKNYRKLALKWHPDK-NPDRIEECTQQFRLLQAAYDVLSDPREREFYD 91
>Z73102-15|CAA97416.1| 401|Caenorhabditis elegans Hypothetical
protein B0035.14 protein.
Length = 401
Score = 46.8 bits (106), Expect = 7e-06
Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Frame = +2
Query: 11 VKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS- 187
+ + A+ +I K YRK A K HPD A + F + A VL+D DKR +D
Sbjct: 144 IDKKASDDDIRKEYRKLALKLHPDKCRAPH---ATEAFKALGNAYAVLSDTDKRRQYDQY 200
Query: 188 GTDPLDPEA----QRAGGHGGPFNNPFHHFQHGSPFQF 289
G + + +R GGHG F H + HG +F
Sbjct: 201 GAEAANSHTPTTRRRGGGHGAFFE---HDYAHGFEAEF 235
>Z35663-8|CAA84728.1| 249|Caenorhabditis elegans Hypothetical
protein T04A8.9 protein.
Length = 249
Score = 46.0 bits (104), Expect = 1e-05
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
G+ ++A++++I AY K +++ HPD + K+ A KKF +A A E+L+ DKR +D
Sbjct: 30 GLAQSASQKDIKSAYYKLSKQHHPDT-NPTNKEEAAKKFHQVAMAYEILSSEDKRKAYD 87
>Z54216-2|CAA90945.1| 242|Caenorhabditis elegans Hypothetical
protein T24H10.3 protein.
Length = 242
Score = 44.0 bits (99), Expect = 5e-05
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPD--NYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMF 181
GVK+ +++ + K Y + + +WHPD N ++ + KF + A ++L+D +KR ++
Sbjct: 20 GVKKDCDEKALKKGYYRQSMRWHPDKSNLVEEDMQTYTTKFQLLNKAYQILSDEEKRKIY 79
Query: 182 DSGTDPLDPEA 214
D T +D EA
Sbjct: 80 DE-TGSVDDEA 89
>AL032657-15|CAA21734.1| 788|Caenorhabditis elegans Hypothetical
protein Y47H9C.5a protein.
Length = 788
Score = 41.9 bits (94), Expect = 2e-04
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
GV+R A+ + I KA++K A K HPD D A +F+ I A EVL D + R +D
Sbjct: 26 GVERDADDRTIRKAFKKLAIKKHPDRNTDDPN--AHDEFVKINKAYEVLKDENLRKKYD 82
>Z70284-16|CAE17884.1| 155|Caenorhabditis elegans Hypothetical
protein K07F5.16 protein.
Length = 155
Score = 33.1 bits (72), Expect = 0.093
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDS 187
G +++ +IT YR + HPD EK F+++ A +LT +R +DS
Sbjct: 21 GCDESSSIDQITAEYRARVRDCHPDKVKEHNTNSTEK-FMELQNAYSILTSDSRRKTYDS 79
>Z81030-9|CAB02713.1| 191|Caenorhabditis elegans Hypothetical
protein C01G10.12 protein.
Length = 191
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Frame = +2
Query: 8 GVKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAE----------KKFIDIAAAKEVLT 157
GV +A +QEI A+ K ++ HPD K + ++F+ + A +VL
Sbjct: 24 GVSASATRQEIRDAFLKKTKQLHPDQSRKSSKSDSRVGWATGSSETEQFMLVKEAYDVLR 83
Query: 158 DPDKRAMFD 184
+ +KR +D
Sbjct: 84 NEEKRKEYD 92
>U55857-8|AAA98034.1| 145|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 15 protein.
Length = 145
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 50 YRKAAQKWHPDNY---HGDEKKLAEKKFIDIAAAKEVLTDPDKRAMF 181
+ + K HPD + +EKKL+E+ + A + L DP KRA +
Sbjct: 7 FHQLQSKLHPDKFVMATDEEKKLSEEHSRKLNEAYKELADPFKRAKY 53
>AL132859-4|CAB60492.1| 365|Caenorhabditis elegans Hypothetical
protein Y39C12A.8 protein.
Length = 365
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = +2
Query: 11 VKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFD 184
V + A+ EI A+RK ++ HPD A K + A +L DP KR +D
Sbjct: 34 VDKKASPDEIRIAFRKRIREVHPDKCKHPSATEASKV---VNNAFSLLMDPAKRRQYD 88
>Z70034-11|CAA93853.2| 364|Caenorhabditis elegans Hypothetical
protein C18E9.2a protein.
Length = 364
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 65 QKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDK 169
Q W+ Y GDEKK A+K D + KE +D ++
Sbjct: 271 QPWYTYEYVGDEKKEAKKDKKDKKSKKEKDSDAEE 305
>U00032-11|AAA50630.1| 189|Caenorhabditis elegans Hypothetical
protein F37A4.2 protein.
Length = 189
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 11 VKRTANKQEITKAYRKAAQKWHPDNYHGDEKKLAEKKFIDIAAAKEVLTDPDKRAMFDSG 190
+ A K+E+ AYR +K + KK A++ AA K LT + + +S
Sbjct: 87 IDAVAKKEELDDAYRHKVEKLEKEEESKTAKKRAKRLRQKAAAKKRKLTKKNNES-DESS 145
Query: 191 TDPLDPEA 214
+D D ++
Sbjct: 146 SDDSDSDS 153
>U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 4 protein.
Length = 951
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 264 KWWKGLLKGPPC--PPARCASGSR 199
KWW+ +GP C PP+ A+ S+
Sbjct: 772 KWWRDRREGPSCGPPPSEKATNSK 795
>AF318608-1|AAK01096.1| 409|Caenorhabditis elegans ionotropic
glutamate receptor GLR-4 protein.
Length = 409
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 264 KWWKGLLKGPPC--PPARCASGSR 199
KWW+ +GP C PP+ A+ S+
Sbjct: 361 KWWRDRREGPSCGPPPSEKATNSK 384
>AF016672-7|AAB66119.1| 378|Caenorhabditis elegans Vig (drosophila
vasa intronic gene)ortholog protein 1, isoform a
protein.
Length = 378
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 215 QRAGGHGGPFNNPFH 259
QR GGHGG N PF+
Sbjct: 352 QRQGGHGGRNNTPFN 366
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,969,352
Number of Sequences: 27780
Number of extensions: 140374
Number of successful extensions: 540
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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