Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P10
         (445 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.49 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.49 
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.49 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   4.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   6.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.1  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  WHPDNYHGDEKKLAEKKFIDIAAAKEVLT 157
           +HP      E+ L  K+F   AA+KE L+
Sbjct: 392 YHPSTQEDSEEHLTPKRFHSRAASKEDLS 420



 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 400 YLDLLFNVTRR 368
           YLD+ FN+T R
Sbjct: 231 YLDITFNITMR 241


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 71  WHPDNYHGDEKKLAEKKFIDIAAAKEVLT 157
           +HP      E+ L  K+F   AA+KE L+
Sbjct: 392 YHPSTQEDSEEHLTPKRFHSRAASKEDLS 420



 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 400 YLDLLFNVTRR 368
           YLD+ FN+T R
Sbjct: 231 YLDITFNITMR 241


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 317 LTLNITSDHSEVTAIQKPPG 376
           +TLNI S  +++T I  PPG
Sbjct: 114 ITLNIESTSNKMTVILTPPG 133


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/30 (23%), Positives = 17/30 (56%)
 Frame = -1

Query: 217 LCLGVEGVRAGVEHRPLVWVRQHLFSSGDV 128
           LCL    ++   ++R + W ++H  +S ++
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEHKMASMNI 74


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 385 ITNLNIVIQTRIDTRYVA 438
           + N ++ IQTR D +YVA
Sbjct: 458 LRNEDLYIQTREDWKYVA 475


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 400 YLDLLFNVTRR 368
           YLD+ FN+T R
Sbjct: 227 YLDITFNITMR 237


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 68  KWHPDNYHG 94
           KW+PD+Y G
Sbjct: 83  KWNPDDYGG 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,475
Number of Sequences: 438
Number of extensions: 1672
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)