Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P09
         (142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0593 - 25959013-25959789                                         26   4.8  
11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836           25   6.4  

>03_05_0593 - 25959013-25959789
          Length = 258

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 74  HIFDDCMIQKC 106
           HIFDDC+++ C
Sbjct: 202 HIFDDCIVESC 212


>11_01_0565 - 4457019-4457052,4457175-4458675,4460791-4460836
          Length = 526

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = +2

Query: 50  VKNIYYDLHI----FDDCMIQKCIKNFIRNTSL 136
           VK +  D H+    FD+ M++ CI  FIR   +
Sbjct: 187 VKAVAGDTHLGGADFDNAMVKHCINEFIRKNDV 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,353,578
Number of Sequences: 37544
Number of extensions: 18581
Number of successful extensions: 34
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)