Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P08
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    28   0.65 
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   1.5  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   2.0  
SPAC1002.10c |sgt1||SGT1 family transcriptional regulator Sgt1|S...    26   3.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   3.5  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    26   3.5  
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    25   8.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.0  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.0  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 28.3 bits (60), Expect = 0.65
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 326 SLKNGVATKILETGTDASATNDDTTEV--YGSANDGIYVFDAKT 451
           +LK GV    ++TG+ ASATN    E+   G   +G  VFD  T
Sbjct: 254 TLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENG-KVFDKNT 296


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 138 NSSDDTMSFSSLFSVTGAAFINPIKN 61
           N S  T SFS  FS TG   + PI+N
Sbjct: 193 NESFQTPSFSGSFSQTGTYQLTPIRN 218


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 362 TGTDASATNDDTTEVYGSANDG 427
           T TD+S  ND    VY   NDG
Sbjct: 201 TSTDSSQYNDQDDHVYDDTNDG 222


>SPAC1002.10c |sgt1||SGT1 family transcriptional regulator
           Sgt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +2

Query: 275 VEADVNDKGEKEYK-GLYSLKNGVATKILETGTDASATNDDTTEVYGSANDGI 430
           +E  +ND+    ++   Y +KN       +T TD+ +  D   E++ + N GI
Sbjct: 431 IETFINDEASNNHREDFYGVKNS------DTDTDSDSLADSDDEIFLNRNQGI 477


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 159 YWTNSFMNSSDDTMSFSSLFSVTGAAF 79
           ++T  F+N+    +S S LFS+ GA F
Sbjct: 514 FFTTIFLNTYASMISSSDLFSILGAHF 540


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/58 (22%), Positives = 25/58 (43%)
 Frame = -2

Query: 441 SKTYIPSLAEP*TXXXXXXXXXXXXXXSRILVATPFFNE*RPLYSFSPLSLTSASTKN 268
           S T +PS++                       + PF N  +P+ + SP+++T++S  N
Sbjct: 645 SDTAVPSMSFANNISSRSVISAATDSKPSTRTSPPFVNNTKPIVAKSPVTVTASSETN 702


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = -2

Query: 168 LDEYWTNSFMNSSDDTMSFSS 106
           L E WTNS  N SDD   FSS
Sbjct: 472 LAESWTNSAKN-SDDPSKFSS 491


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 363 PAPMHQQLTMIQPKFMAQLTMVYT 434
           PAP + +LT+ +P F   LT+ +T
Sbjct: 454 PAPSNYKLTIEKPPFPCDLTIPHT 477


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 186 RLTMSYLDEYWTNSFMNSSDDTMSFSSLFSVTGAAFINPIKNTTPK 49
           R + SY DE      + SSD +   SS FS   + +  P + T PK
Sbjct: 320 RRSRSYSDE--DEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPK 363


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,833
Number of Sequences: 5004
Number of extensions: 31596
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)