Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P08
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80...    29   2.0  
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954...    29   2.6  
07_03_1486 + 26899479-26899549,26899861-26899989,26900649-269008...    28   3.5  
12_01_0107 - 843820-846335,846400-846511                               28   4.6  
01_06_1745 - 39609894-39610030,39610127-39610223,39613856-396139...    27   6.0  
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436...    27   8.0  

>11_01_0107 -
           801148-803633,803727-803860,803990-804006,804321-804504,
           804819-804883
          Length = 961

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +2

Query: 275 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYGSANDGIYVFDAKTN 454
           VE D N+KG     G  S+ N VAT       D + ++++ TEV  +A     + DA  +
Sbjct: 254 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGSDNNFTEVQSAAEGKCALSDANLD 311

Query: 455 KTE 463
             E
Sbjct: 312 SQE 314


>02_02_0375 +
           9543411-9543872,9547222-9547290,9547382-9547384,
           9548336-9548422,9549027-9549094,9549192-9549333
          Length = 276

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +2

Query: 68  IGLIKAAPVTEN-NDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 208
           I + K+ PV +  +  KL+V+ E+   EF+     YD+  + VP NS+
Sbjct: 167 IVIFKSPPVLQEVHKGKLVVNGEVRNEEFILEPPSYDMNPVQVPENSV 214


>07_03_1486 + 26899479-26899549,26899861-26899989,26900649-26900834,
            26901025-26901247,26901662-26901666,26901796-26901924,
            26902697-26902894,26903138-26903356,26903461-26903699,
            26903797-26903888,26904009-26904224,26904327-26904554,
            26904631-26904722,26904806-26904899,26905475-26905567,
            26905667-26906640,26906727-26906841,26907135-26908895
          Length = 1687

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 80   KAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSLTVPLNSL 208
            +AAP+ E+      VSS L ++E ++ S   D VS   P   L
Sbjct: 1575 EAAPILEDRGMAPSVSSRLSLDEIIEISCDLDAVSALPPAKPL 1617


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 275 VEADVNDKGEKEYKGLYSLKNGVATKILETGTDASATNDDTTEVYGSANDGIYVFDAKTN 454
           VE D N+KG     G  S+ N VAT       D +  +++ TEV  +A     + DA  +
Sbjct: 168 VETDGNEKGSFTDDG--SISNEVATTQSMVHMDGAGFDNNFTEVQSAAEGKCTLSDANLD 225

Query: 455 KTE 463
             E
Sbjct: 226 SQE 228


>01_06_1745 -
           39609894-39610030,39610127-39610223,39613856-39613996,
           39614094-39614272,39615067-39615111,39615802-39615858,
           39615935-39616163,39616348-39616418,39619527-39619635
          Length = 354

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 72  PIKNTTPKKSVSCILVSC 19
           PIKN TPK+S S +  SC
Sbjct: 335 PIKNDTPKRSASYVCNSC 352


>01_06_1153 -
           34942608-34942975,34943082-34943330,34943516-34943625,
           34944698-34944771,34945237-34945306,34945848-34945947,
           34946045-34946120,34946572-34946646,34947067-34947156,
           34947238-34947354,34947457-34947567,34947649-34947788,
           34947962-34948043,34948224-34948303,34948938-34949046,
           34949295-34949417,34949972-34950044,34950338-34950489,
           34951029-34951127,34952258-34952383
          Length = 807

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 74  LIKAAPVTENNDEKLIVSSELFINEFVQYSSKYDIVSL 187
           L+ +AP    N  KLI +SE F N+ V+     ++++L
Sbjct: 263 LLSSAPSRRMNPSKLIDNSEFFQNKLVETIQFMEVLNL 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,750,610
Number of Sequences: 37544
Number of extensions: 175792
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)