Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P07
         (388 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   221   3e-59
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   221   3e-59
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.25 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   0.78 
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   2.4  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   2.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   3.1  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   4.1  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   5.5  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   5.5  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    24   9.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    24   9.6  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  221 bits (540), Expect = 3e-59
 Identities = 98/120 (81%), Positives = 108/120 (90%)
 Frame = +3

Query: 27  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 206
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 207 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 386
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  221 bits (540), Expect = 3e-59
 Identities = 98/120 (81%), Positives = 108/120 (90%)
 Frame = +3

Query: 27  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 206
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 207 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 386
           +SEALEA RIC NKYLVK  GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFG
Sbjct: 61  TSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFG 120


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 51  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 227
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 228 G 230
           G
Sbjct: 94  G 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 0.78
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 108 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 227
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -2

Query: 222 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 103
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 129  DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 272
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 270 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 374
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 167 WEVIHCRSLFAQVENTDLWVRHTPT 93
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 84  SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 194
           S FC   PDPK       K  A  DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 133 WAKRERQWMTSH 168
           W +RERQW+  H
Sbjct: 91  WLRRERQWLQRH 102


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -3

Query: 371 HPSLEPISSSARQHFIDADDMEGV*SHPDVELIFTA 264
           HP   P +  A++ FI+ +    V S P+   I+ A
Sbjct: 35  HPDKNPGNEEAQEKFIEINKAHEVLSDPEQRKIYDA 70


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 EQLSSEALEAGRICCN 245
           E LSS+ +   RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,743,488
Number of Sequences: 5004
Number of extensions: 34558
Number of successful extensions: 122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)