Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P07
         (388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   0.92 
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    22   2.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   2.8  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 23.4 bits (48), Expect = 0.92
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 228 LLPAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLG 109
           L+  P  + +  H  + A  V  + LSLS  P   +GS G
Sbjct: 2   LVARPMQALSIRHAVILASFVWIYALSLSLPPLFGWGSYG 41


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +1

Query: 100 VCLTQRSVFSTWAKRERQWMTSH 168
           +CLT+R +   +  R  +W   H
Sbjct: 45  LCLTERQIKIWFQNRRMKWKKEH 67


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   HEALCGEHNGAPTSEMLS 55
           +E+LCG H     +E+LS
Sbjct: 47  YESLCGRHEKRLLNELLS 64


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 2   HEALCGEHNGAPTSEMLS 55
           +E+LCG H     +E+LS
Sbjct: 47  YESLCGRHEKRLLNELLS 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,752
Number of Sequences: 438
Number of extensions: 2762
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)