Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P06
(502 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q8SYJ2 Cluster: RE56733p; n=8; Neoptera|Rep: RE56733p -... 136 3e-31
UniRef50_Q4PM95 Cluster: NADH dehydrogenase 1 alpha subcomplex; ... 103 2e-21
UniRef50_Q4PP83 Cluster: Putative NADH dehydrogenase 1 alpha sub... 96 5e-19
UniRef50_UPI0000DB6F92 Cluster: PREDICTED: similar to CG32230-PA... 94 1e-18
UniRef50_Q56UG5 Cluster: NADH-ubiquinone oxidoreductase MLRQ sub... 82 6e-15
UniRef50_O00483 Cluster: NADH dehydrogenase [ubiquinone] 1 alpha... 80 3e-14
UniRef50_Q4RG36 Cluster: Chromosome 2 SCAF15106, whole genome sh... 72 6e-12
UniRef50_Q9NRX3 Cluster: NADH dehydrogenase [ubiquinone] 1 alpha... 70 3e-11
UniRef50_A7RHJ0 Cluster: Predicted protein; n=1; Nematostella ve... 64 1e-09
UniRef50_UPI0000E46492 Cluster: PREDICTED: similar to MLRQ subun... 64 2e-09
UniRef50_Q17GW4 Cluster: NADH:ubiquinone dehydrogenase, putative... 57 3e-07
UniRef50_UPI0000F1EBF9 Cluster: PREDICTED: hypothetical protein;... 52 7e-06
UniRef50_Q0P477 Cluster: Zgc:153317 protein; n=6; Euteleostomi|R... 44 0.002
UniRef50_Q177R5 Cluster: Putative uncharacterized protein; n=1; ... 41 0.014
UniRef50_Q5KPW0 Cluster: Expressed protein; n=1; Filobasidiella ... 41 0.014
UniRef50_Q4PAR3 Cluster: Putative uncharacterized protein; n=1; ... 38 0.096
UniRef50_Q9C002 Cluster: Normal mucosa of esophagus-specific gen... 36 0.68
UniRef50_A1ZNA8 Cluster: Putative uncharacterized protein; n=1; ... 35 1.2
UniRef50_A1BQX2 Cluster: Tricellulin isoform c; n=2; Euarchontog... 34 1.6
UniRef50_Q8N4S9 Cluster: MARVEL domain-containing protein 2; n=2... 34 1.6
UniRef50_Q592T1 Cluster: Putative uncharacterized protein; n=1; ... 33 2.7
UniRef50_A5E329 Cluster: Putative uncharacterized protein; n=1; ... 32 6.3
UniRef50_O42490 Cluster: Pineal opsin; n=1; Petromyzon marinus|R... 32 6.3
UniRef50_Q8YXY2 Cluster: Alr1074 protein; n=9; Cyanobacteria|Rep... 32 8.3
UniRef50_Q4V2L3 Cluster: Putative uncharacterized protein; n=1; ... 32 8.3
UniRef50_Q5CVD1 Cluster: Large protein with possible domain of n... 32 8.3
>UniRef50_Q8SYJ2 Cluster: RE56733p; n=8; Neoptera|Rep: RE56733p -
Drosophila melanogaster (Fruit fly)
Length = 83
Score = 136 bits (329), Expect = 3e-31
Identities = 57/81 (70%), Positives = 68/81 (83%)
Frame = +2
Query: 98 MQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTK 277
MQGL + SLKK+ ALIPLYVCVG G GAV+Y+ RLATRNPDV+WN+ +NPEPW+EY+ K
Sbjct: 1 MQGLGLQSLKKNPALIPLYVCVGAGAIGAVYYMARLATRNPDVTWNRTSNPEPWQEYKEK 60
Query: 278 QYKFYSPTRDYSKEESPAPKY 340
QYKFYSP RDYSK +S AP +
Sbjct: 61 QYKFYSPVRDYSKTKSAAPNF 81
>UniRef50_Q4PM95 Cluster: NADH dehydrogenase 1 alpha subcomplex;
n=1; Ixodes scapularis|Rep: NADH dehydrogenase 1 alpha
subcomplex - Ixodes scapularis (Black-legged tick) (Deer
tick)
Length = 81
Score = 103 bits (247), Expect = 2e-21
Identities = 46/77 (59%), Positives = 57/77 (74%)
Frame = +2
Query: 98 MQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTK 277
M+ S+ +K+H +LIPL V VG G GAV+Y RLA RNPDVSWNKKTNPEPW+E+ K
Sbjct: 1 MKSFSLQGMKRHPSLIPLVVIVGFGGLGAVWYTARLALRNPDVSWNKKTNPEPWQEWSNK 60
Query: 278 QYKFYSPTRDYSKEESP 328
QYK +S T+DYS+ P
Sbjct: 61 QYKLWS-TKDYSELPKP 76
>UniRef50_Q4PP83 Cluster: Putative NADH dehydrogenase 1 alpha
subcomplex 4; n=1; Lysiphlebus testaceipes|Rep: Putative
NADH dehydrogenase 1 alpha subcomplex 4 - Lysiphlebus
testaceipes (Greenbugs aphid parastoid)
Length = 81
Score = 95.9 bits (228), Expect = 5e-19
Identities = 42/81 (51%), Positives = 55/81 (67%)
Frame = +2
Query: 98 MQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTK 277
MQG++ +S+ K+ +L+PLYVC G G+ YL RLATRNPDVSW K NPEPW+ Y+ K
Sbjct: 1 MQGMTKSSIAKNPSLLPLYVCFAAGLIGSTGYLIRLATRNPDVSWINKNNPEPWQYYKDK 60
Query: 278 QYKFYSPTRDYSKEESPAPKY 340
QYKF++ R E + P Y
Sbjct: 61 QYKFWASDRVKDTEVAKPPTY 81
>UniRef50_UPI0000DB6F92 Cluster: PREDICTED: similar to CG32230-PA,
isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
to CG32230-PA, isoform A - Apis mellifera
Length = 80
Score = 94.3 bits (224), Expect = 1e-18
Identities = 42/81 (51%), Positives = 55/81 (67%)
Frame = +2
Query: 98 MQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTK 277
MQGL+ SLKK+ L+PL+ C+G G A YL RLA R+PDV+WN ++NPEPW EY+ K
Sbjct: 1 MQGLTKESLKKNSMLLPLFFCIGFGAFAATGYLLRLALRSPDVTWNTRSNPEPWNEYKDK 60
Query: 278 QYKFYSPTRDYSKEESPAPKY 340
YKF S RD + + P+Y
Sbjct: 61 DYKFIS-VRDTTNFRATPPQY 80
>UniRef50_Q56UG5 Cluster: NADH-ubiquinone oxidoreductase MLRQ
subunit-like protein; n=1; Lymnaea stagnalis|Rep:
NADH-ubiquinone oxidoreductase MLRQ subunit-like protein
- Lymnaea stagnalis (Great pond snail)
Length = 97
Score = 82.2 bits (194), Expect = 6e-15
Identities = 42/80 (52%), Positives = 52/80 (65%), Gaps = 3/80 (3%)
Frame = +2
Query: 98 MQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYR-- 271
M GL++ASLKKH +LIPL+VCVG G A A +Y+ RLA ++PDV W K E R
Sbjct: 18 MPGLTVASLKKHPSLIPLFVCVGGGMAWAAYYIYRLAAKSPDVGW--KDKHEGMANLRWP 75
Query: 272 -TKQYKFYSPTRDYSKEESP 328
KQYKFY+P DYS + P
Sbjct: 76 VNKQYKFYAPNIDYSSLKKP 95
>UniRef50_O00483 Cluster: NADH dehydrogenase [ubiquinone] 1 alpha
subcomplex subunit 4; n=25; Euteleostomi|Rep: NADH
dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4
- Homo sapiens (Human)
Length = 81
Score = 79.8 bits (188), Expect = 3e-14
Identities = 39/77 (50%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Frame = +2
Query: 113 IASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEY-RTKQYKF 289
I KKH +LIPL+V +G G GA YL RLA NPDV W+ + NPEPW + QYKF
Sbjct: 6 IGQAKKHPSLIPLFVFIGTGATGATLYLLRLALFNPDVCWD-RNNPEPWNKLGPNDQYKF 64
Query: 290 YSPTRDYSKEESPAPKY 340
YS DYSK + P +
Sbjct: 65 YSVNVDYSKLKKERPDF 81
>UniRef50_Q4RG36 Cluster: Chromosome 2 SCAF15106, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 2 SCAF15106, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 67
Score = 72.1 bits (169), Expect = 6e-12
Identities = 31/66 (46%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Frame = +2
Query: 92 SKMQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYR 271
S + G+ L+ H ALIPL++ +G G ++ YL RLA +NPDVSW++K NPEPW +
Sbjct: 2 SSLLGVVRKQLRSHPALIPLFIFIGGGATMSMLYLSRLALKNPDVSWDRKNNPEPWNKME 61
Query: 272 -TKQYK 286
+QYK
Sbjct: 62 PNQQYK 67
>UniRef50_Q9NRX3 Cluster: NADH dehydrogenase [ubiquinone] 1 alpha
subcomplex subunit 4-like 2; n=20; Euteleostomi|Rep:
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex
subunit 4-like 2 - Homo sapiens (Human)
Length = 87
Score = 69.7 bits (163), Expect = 3e-11
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +2
Query: 122 LKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYR-TKQYKFYSP 298
+K+H +IP+ + +G A YL RLA R+PDV W++K NPEPW QYKF +
Sbjct: 14 IKRHPGIIPMIGLICLGMGSAALYLLRLALRSPDVCWDRKNNPEPWNRLSPNDQYKFLAV 73
Query: 299 TRDYSKEESPAPKY 340
+ DY K + P +
Sbjct: 74 STDYKKLKKDRPDF 87
>UniRef50_A7RHJ0 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 82
Score = 64.5 bits (150), Expect = 1e-09
Identities = 26/73 (35%), Positives = 42/73 (57%)
Frame = +2
Query: 122 LKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPT 301
LK++ LIPL+VC+G GA +++GR +P+ + +KK NP PW+ + + T
Sbjct: 6 LKRYPELIPLFVCIGAAVGGATWFIGRSLLTHPEAAIDKKNNPYPWQRVAPNEQRKLFST 65
Query: 302 RDYSKEESPAPKY 340
+DYS + P Y
Sbjct: 66 KDYSNLKHERPDY 78
>UniRef50_UPI0000E46492 Cluster: PREDICTED: similar to MLRQ subunit
of the NADH: ubiquinone oxidoreductase complex, partial;
n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to MLRQ subunit of the NADH: ubiquinone
oxidoreductase complex, partial - Strongylocentrotus
purpuratus
Length = 69
Score = 64.1 bits (149), Expect = 2e-09
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Frame = +2
Query: 140 LIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQ-YKFYSPTR-DYS 313
LIPL++ G G A FYL RL T++PD SW + TNP PW+ + Q KFYS + D+
Sbjct: 1 LIPLFIATGGGAVFAAFYLTRLVTKSPDASWRRSTNPHPWQNIKPDQNIKFYSAGKIDFK 60
Query: 314 --KEESP 328
K+ SP
Sbjct: 61 NLKKNSP 67
>UniRef50_Q17GW4 Cluster: NADH:ubiquinone dehydrogenase, putative;
n=1; Aedes aegypti|Rep: NADH:ubiquinone dehydrogenase,
putative - Aedes aegypti (Yellowfever mosquito)
Length = 94
Score = 56.8 bits (131), Expect = 3e-07
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 98 MQGLSIASLKKHKALIPLY-VCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRT 274
M+G K+ L PLY +C+ + F R NPDV + K NPEPW+ YR
Sbjct: 1 MRGWGFREALKYPLLWPLYGLCIA-DLSWLTFSATRTLLYNPDVVLDHKNNPEPWQAYRE 59
Query: 275 KQYKFYSPTRDYSKEESPAP 334
+Y+ ++ T DYSK + AP
Sbjct: 60 GRYRLWAGTYDYSKLKCKAP 79
>UniRef50_UPI0000F1EBF9 Cluster: PREDICTED: hypothetical protein;
n=1; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 56
Score = 52.0 bits (119), Expect = 7e-06
Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 179 GAVFYLGRLATRNPDVSWNKKTNPEPWEEYR-TKQYKFYSPTRDYSKEESPAPKY 340
GA YL RLA R P V WNK TNPEPW + + QYKF + DY + P +
Sbjct: 3 GAFTYLFRLA-RGPHVVWNKSTNPEPWNQLSPSYQYKFLAINTDYKNLKKEGPDF 56
>UniRef50_Q0P477 Cluster: Zgc:153317 protein; n=6; Euteleostomi|Rep:
Zgc:153317 protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 86
Score = 44.0 bits (99), Expect = 0.002
Identities = 24/55 (43%), Positives = 26/55 (47%)
Frame = +2
Query: 98 MQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWE 262
M G I L+K K LIPL V GA + PDV NK NPEPWE
Sbjct: 1 MNGGLIQLLRKRKELIPLLGIVSCAAFGAATTMVYFLLTKPDVILNKTRNPEPWE 55
>UniRef50_Q177R5 Cluster: Putative uncharacterized protein; n=1;
Aedes aegypti|Rep: Putative uncharacterized protein -
Aedes aegypti (Yellowfever mosquito)
Length = 129
Score = 41.1 bits (92), Expect = 0.014
Identities = 25/79 (31%), Positives = 38/79 (48%)
Frame = +2
Query: 101 QGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQ 280
+G + +KK+ A+IPL V +G G + Y + PDVS NKKT W+
Sbjct: 37 RGFTFTDMKKNPAVIPLVVIIGATVTGLLGYCTYASLTRPDVSLNKKT--YEWDTMDVMN 94
Query: 281 YKFYSPTRDYSKEESPAPK 337
K R +++E P P+
Sbjct: 95 PKKLK-MRVFNQEYKPMPE 112
>UniRef50_Q5KPW0 Cluster: Expressed protein; n=1; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 93
Score = 41.1 bits (92), Expect = 0.014
Identities = 15/44 (34%), Positives = 30/44 (68%)
Frame = +2
Query: 140 LIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYR 271
++P++ VGI C GA YL +L ++ P+V W++ ++ PW++ +
Sbjct: 16 VMPIFGIVGIACVGATAYLWKL-SQGPEVVWDRSSDWRPWDKVK 58
>UniRef50_Q4PAR3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 198
Score = 38.3 bits (85), Expect = 0.096
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 191 YLGRLATRNPDVSWNKKTNPEPWEEYRT-KQYKFYSPTRDYSKE 319
YL RLA R PDV W++K NP PW Q K + + + K+
Sbjct: 150 YLSRLA-RGPDVIWDRKNNPTPWNNVEPGTQTKLMTVNQQFDKQ 192
>UniRef50_Q9C002 Cluster: Normal mucosa of esophagus-specific gene 1
protein; n=11; Eutheria|Rep: Normal mucosa of
esophagus-specific gene 1 protein - Homo sapiens (Human)
Length = 83
Score = 35.5 bits (78), Expect = 0.68
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +2
Query: 122 LKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWE 262
L K K LIPL V + + GA + + DV ++K NPEPWE
Sbjct: 7 LMKRKELIPLVVFMTVAAGGASSF-AVYSLWKTDVILDRKKNPEPWE 52
>UniRef50_A1ZNA8 Cluster: Putative uncharacterized protein; n=1;
Microscilla marina ATCC 23134|Rep: Putative
uncharacterized protein - Microscilla marina ATCC 23134
Length = 848
Score = 34.7 bits (76), Expect = 1.2
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -1
Query: 499 TIILFKKMIINYNTY-QFSTLDQGLNNQQPPFITYLLF 389
T+ILFK +I+ + +TLD G QQPP +T L+F
Sbjct: 706 TVILFKNVIVKVESNPNTTTLDIGSPTQQPPLLTNLIF 743
>UniRef50_A1BQX2 Cluster: Tricellulin isoform c; n=2;
Euarchontoglires|Rep: Tricellulin isoform c - Homo
sapiens (Human)
Length = 442
Score = 34.3 bits (75), Expect = 1.6
Identities = 22/53 (41%), Positives = 27/53 (50%)
Frame = -3
Query: 251 QGWFSYSRKHLGYVLPAFPSRRLHRHTQCPHRHTVGLEPYVSSNLQYSIPASW 93
+G FS SRK V P P L RHTQ ++ +E Y NL+YS SW
Sbjct: 141 EGTFS-SRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEY---NLRYSYMKSW 189
>UniRef50_Q8N4S9 Cluster: MARVEL domain-containing protein 2; n=29;
Tetrapoda|Rep: MARVEL domain-containing protein 2 - Homo
sapiens (Human)
Length = 558
Score = 34.3 bits (75), Expect = 1.6
Identities = 22/53 (41%), Positives = 27/53 (50%)
Frame = -3
Query: 251 QGWFSYSRKHLGYVLPAFPSRRLHRHTQCPHRHTVGLEPYVSSNLQYSIPASW 93
+G FS SRK V P P L RHTQ ++ +E Y NL+YS SW
Sbjct: 141 EGTFS-SRKEADAVFPRDPYGSLDRHTQTVRTYSEKVEEY---NLRYSYMKSW 189
>UniRef50_Q592T1 Cluster: Putative uncharacterized protein; n=1;
Lymnaea stagnalis|Rep: Putative uncharacterized protein
- Lymnaea stagnalis (Great pond snail)
Length = 66
Score = 33.5 bits (73), Expect = 2.7
Identities = 16/52 (30%), Positives = 22/52 (42%)
Frame = +2
Query: 95 KMQGLSIASLKKHKALIPLYVCVGIGCAGAVFYLGRLATRNPDVSWNKKTNP 250
K G + + KK+ LIPL + C G ++G PDV K P
Sbjct: 4 KTFGFGLRAFKKYPELIPLVGIITTACVGCAAFMGYALATKPDVRVVKSRGP 55
>UniRef50_A5E329 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 157
Score = 32.3 bits (70), Expect = 6.3
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = -1
Query: 247 VGFLIPGNIWVTCCQPSQVEDCTGTPNAHTDIQWD*SLMFLQTCNTQSLHLGRKEIR 77
V FL+ ++W CC S V +P Q LMFL+ C+T L RKE R
Sbjct: 105 VPFLLAASVWWFCCACSSVSCSVSSPGKD---QLYLRLMFLRCCSTSKLE--RKESR 156
>UniRef50_O42490 Cluster: Pineal opsin; n=1; Petromyzon marinus|Rep:
Pineal opsin - Petromyzon marinus (Sea lamprey)
Length = 444
Score = 32.3 bits (70), Expect = 6.3
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 272 SCTLPKVQGWFSYSRKHLGYVL-PAFPSRRLHRHT 171
+CTLP V GW SY +G P + S LH HT
Sbjct: 176 ACTLPPVLGWSSYRPSMIGTTCEPNWYSGELHDHT 210
>UniRef50_Q8YXY2 Cluster: Alr1074 protein; n=9; Cyanobacteria|Rep:
Alr1074 protein - Anabaena sp. (strain PCC 7120)
Length = 219
Score = 31.9 bits (69), Expect = 8.3
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 161 VGIGCAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSP 298
VG G +G F L A R+PD +W KK WE +Q K ++P
Sbjct: 99 VGFGSSGG-FTLPNGAVRSPDAAWIKKAR---WEAIPVEQRKRFAP 140
>UniRef50_Q4V2L3 Cluster: Putative uncharacterized protein; n=1;
Burkholderia mallei|Rep: Putative uncharacterized
protein - Burkholderia mallei (Pseudomonas mallei)
Length = 162
Score = 31.9 bits (69), Expect = 8.3
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 209 LPAFPSRRLHRHTQCPHRHTVGLEPY 132
LP FPS RLH T HR+ LEP+
Sbjct: 61 LPVFPSSRLHVFTSSRHRNFPPLEPF 86
>UniRef50_Q5CVD1 Cluster: Large protein with possible domain of
nucleoporin, Non-repetitive/WGA- negative nucleoporin;
n=3; Cryptosporidium|Rep: Large protein with possible
domain of nucleoporin, Non-repetitive/WGA- negative
nucleoporin - Cryptosporidium parvum Iowa II
Length = 2222
Score = 31.9 bits (69), Expect = 8.3
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +3
Query: 48 CYFSANSYNNRISLRPRCRD*VLQV*RNIR 137
C+ S NS N+++++ PRC+ +L + R IR
Sbjct: 938 CFLSINSCNHKLAITPRCKGLILLIGRIIR 967
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 496,359,045
Number of Sequences: 1657284
Number of extensions: 10379462
Number of successful extensions: 26571
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 25839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26563
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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