Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P06
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    26   2.8  
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe...    26   3.7  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    26   3.7  
SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.7  
SPAC25H1.03 |mug66|mug66|meiotically upregulated gene Mug66|Schi...    25   4.8  
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|...    25   6.4  

>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 180 VQSSTWEGWQHVTQMFPGIRKPT 248
           +Q++TW GWQ  TQ  PG  + T
Sbjct: 446 LQNTTWNGWQGFTQS-PGSLETT 467


>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 7/13 (53%), Positives = 12/13 (92%)
 Frame = -2

Query: 111 LNPCILDVKKYDY 73
           LNPC+ D++K++Y
Sbjct: 124 LNPCLYDIEKFEY 136


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +2

Query: 83  FFTSKMQGLSIASLKKHKALIPLYVCVGIGCAG-AVFYLGRLATRNPDVSWN 235
           F   +     +  LK  K  +P+ V  G+G AG     +  +A   P+V+ N
Sbjct: 48  FSHKRTTSADVVKLKNEKVKVPIPVYFGVGTAGLPESIISHMAMYGPEVAPN 99


>SPAPB8E5.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 73

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 140 LIPLYVCVGIGCAGAVFYLGRLATRNPDV----SWNKKTNPEPWEEYRTKQYKFY 292
           L PL + +GI  + A+F +G     +P++    SW  +T  +  EE + K+ +F+
Sbjct: 21  LKPLAILIGIAGSTAIFTMGYKIYSDPEIRRSPSWVAQTQQK--EETKVKKPQFH 73


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 290  RTCTAWSCTLPKVQGWFSYSRKHLGYVLPAF 198
            ++C+    TLP V+ +F Y +  L  +LP F
Sbjct: 2099 QSCSQIEVTLPCVECFFKYKKDALHTLLPGF 2129


>SPAC25H1.03 |mug66|mug66|meiotically upregulated gene
           Mug66|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 LATRNPDVSWNKKTNPEPWEEY 268
           L  R+P  SW  K N  PWE++
Sbjct: 85  LYERSPKKSWFGKGNTIPWEQW 106


>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 4   RGLFPTFNRGFIYWFAILVQTAIIIVFLYVQDAGI 108
           R  +P FN   + + A + Q+A+I   L ++DA +
Sbjct: 308 RSRYPDFNARKLVYHAYVEQSAVINDLLEIEDASL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,628
Number of Sequences: 5004
Number of extensions: 44401
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)