Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P06
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    29   2.1  
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157...    29   2.8  
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901...    28   3.7  
01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866           28   4.8  
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    27   6.4  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    27   8.5  

>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = -3

Query: 329 LVTPPSSSLL*ASRTCTAWSCTLPKVQGWFSYSRKHLGYVLPAFPSRRLHRHTQCPHRHT 150
           L  P +++L  +SR  + W+  +P V+G+   SR+ +          R H    CP  H 
Sbjct: 62  LSIPGTNALRHSSRNSSRWAKPMPFVEGFQVSSRQGMSLFRKHGNDYRSHSGNDCPGTHE 121

Query: 149 VGLEPYVSSN 120
             +  Y+ +N
Sbjct: 122 EAM--YMGNN 129


>08_01_0189 +
           1578935-1578950,1579227-1579390,1579493-1579605,
           1579850-1580399,1580514-1580813,1581093-1581133,
           1581359-1581606,1581983-1582086,1582177-1582323
          Length = 560

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 212 RNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDY 310
           R  +V WN +   E  E YR K+     P RD+
Sbjct: 526 RKYNVKWNDEVTAEDMEAYRMKRIHHDDPMRDF 558


>01_06_1729 +
           39486553-39487413,39487953-39488020,39489574-39490154,
           39490623-39491432,39491738-39493035
          Length = 1205

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 239 SYSRKHLGYVLPAFPSRRLHRHTQCPHRHTVGLEPYVSSNLQYSIP 102
           S++  H     P+FP+R   +   CP R   GL+P   S+ +Y++P
Sbjct: 76  SFAALHPDDRSPSFPTRH-QQVGLCPRRTRPGLKPVWRSSHRYTLP 120


>01_01_0910 + 7175107-7175319,7175448-7175588,7175696-7175866
          Length = 174

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 268 VLFPRFRVGFLIPGNIWVTCCQPSQVEDCTG 176
           V+ P FRV    PG +  + C P+ V D  G
Sbjct: 45  VVMPGFRVSLAEPGRLVCSFCVPAAVADADG 75


>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 17/70 (24%), Positives = 32/70 (45%)
 Frame = -3

Query: 329 LVTPPSSSLL*ASRTCTAWSCTLPKVQGWFSYSRKHLGYVLPAFPSRRLHRHTQCPHRHT 150
           L  P +++L  +SR  + W+  +P V+G+   SR+ +          + H    CP  H 
Sbjct: 62  LSIPGTNALRHSSRNSSRWAKPMPFVEGFQVSSRQGMSLFRKHGNDCKSHSGNDCPGTHE 121

Query: 149 VGLEPYVSSN 120
             +  Y+ +N
Sbjct: 122 EAM--YMGNN 129


>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
            19187021-19187927,19188015-19188142,19189270-19189356,
            19189422-19189472,19189582-19189668,19189746-19189873,
            19190469-19190608,19190721-19190882,19190964-19192733,
            19192807-19192922,19193077-19193227,19193243-19193371,
            19193598-19194139
          Length = 1722

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 218  PDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESPAPKY*SVLLH 358
            PD    ++T+P P  E+ TK+     P +D S+  S AP+    + H
Sbjct: 1215 PDTQDFERTHPSPSTEHDTKE-----PLKDQSRSTSVAPEGSGTMAH 1256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,157,251
Number of Sequences: 37544
Number of extensions: 282290
Number of successful extensions: 758
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)