Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P06
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    29   1.4  
Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical p...    28   3.3  
AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical ...    28   3.3  
AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical ...    28   3.3  
Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    27   7.6  

>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
           protein 5, isoforma protein.
          Length = 1544

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 228 ETSGLRVASLPK*KTAPAHPMPTQT 154
           ETS + + SLP  K AP  P+PTQ+
Sbjct: 666 ETSQVELPSLPTTKMAPPQPVPTQS 690


>Z82268-12|CAL64003.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 173 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 328
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>Z82268-10|CAB05202.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 173 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 328
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>AL021476-3|CAL63996.1| 1210|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1c protein.
          Length = 1210

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 173 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 328
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>AL021476-1|CAA16317.1|  972|Caenorhabditis elegans Hypothetical
           protein Y37A1C.1a protein.
          Length = 972

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 173 CAGAVFYLGRLATRNPDVSWNKKTNPEPWEEYRTKQYKFYSPTRDYSKEESP 328
           C GA+F    L  R PDV+W   T    ++   +   K  S T ++ K   P
Sbjct: 691 CFGAIFMY--LLHRKPDVNWGSSTQAHSYKNALSAMIKL-STTEEHVKNYRP 739


>Z81583-4|CAB04669.1|  323|Caenorhabditis elegans Hypothetical
           protein T02G6.4 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 502 QTIILFKKMIINYNTYQFSTLDQGLNNQQPPFI 404
           +T +L ++  + + ++ FS L  GLN  + PF+
Sbjct: 168 ETFVLVRRKYLMFQSFNFSVLITGLNQIKFPFL 200


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   IISNF*SGFHILVCYFSANSYNN 77
           +++N     H+L+CY  A +Y N
Sbjct: 315 LLTNINGSIHLLICYLMATNYRN 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,071
Number of Sequences: 27780
Number of extensions: 249225
Number of successful extensions: 676
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)