Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P04
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    29   0.32 
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    28   0.74 
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    26   2.3  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    25   4.0  
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    25   5.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   5.2  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   6.9  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    24   9.1  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   9.1  

>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 29.1 bits (62), Expect = 0.32
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -1

Query: 369 MLKCQFLSHYFAHARGRWRRRPVDSALVIRLSLKAAPPCRVP 244
           ML   F+  Y  H+   W+RR +   +  R SL+     R+P
Sbjct: 14  MLLFAFIPAYAGHSAEEWKRRSIYQIITDRFSLEEGATERIP 55


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 27.9 bits (59), Expect = 0.74
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 13  SARGTSKLTTKEMTTNTKVAIQQ-NVTTFAGKQPNLADATQTKVAT 147
           +A G +K T K+    T  A Q+ N TT  GK+    D+T+T  +T
Sbjct: 549 NANGETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETGNST 594


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 203 DLVSNNTPLPQPRTG 247
           +LVS  +PLP PRTG
Sbjct: 157 NLVSTQSPLPSPRTG 171


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 ARNRG*YETSDLVSNNTPLPQPRTGT 250
           AR  G   T  LV +  PLPQP+ G+
Sbjct: 182 AREFGWKYTVQLVEHGDPLPQPQAGS 207


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = -1

Query: 228 NGVLFETRSLVSYYPRFRAIGLPFVIQCCH 139
           N    E +SL   Y     +GLPFV    H
Sbjct: 223 NNFSLEMKSLKFVYTPIHGVGLPFVTSALH 252


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +2

Query: 59  IQKWLFNRT*QHLQES---NRIWQMLHKQK 139
           + +W+F+R  + L +S     +W MLH+ K
Sbjct: 180 LDEWVFDRLDELLAQSLEDKELWDMLHRDK 209


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -1

Query: 144 CHFCLCSICQIRLLSCKCCY--VLLNSHFCICSHFLSC*FTSSSCRIPAA 1
           C F  CS  +IRL          LL+    +CSH  S  FTS S  I ++
Sbjct: 106 CRFSNCSEDEIRLFKQHQSLDSFLLSLFDLLCSHHFSVEFTSISLIIKSS 155


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 16   ARGTSKLTTKEMTTNTKVAIQQNVTTFAGKQPNLADATQTKVAT 147
            A GT+   T ++TT T+V      T  AG +  +   T+T+  T
Sbjct: 1152 ATGTAGTET-QLTTATEVQPTTGATGTAGTETQVTTGTETQATT 1194


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 392 ILFCTLRLC*NVSFCRIILRMRGEDGGDARSIARS 288
           IL+ T+R    +S  R I  +  E  GDA+ +ARS
Sbjct: 77  ILWLTVRTVALLSHARNIQCLIQESDGDAKDVARS 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,553
Number of Sequences: 5004
Number of extensions: 37962
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)