Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P04
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0010 + 19235419-19236450 31 0.42
09_04_0088 + 14494711-14494931,14496309-14496399,14496496-144965... 31 0.55
11_06_0007 - 19171122-19172036 30 0.96
01_01_0688 - 5267781-5267814,5269851-5270153,5270605-5270870,527... 29 1.3
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 29 1.7
03_02_0458 + 8643804-8643904,8643994-8644091,8644206-8644504,864... 29 1.7
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 28 2.9
04_04_0959 + 29692740-29693035,29693102-29693267,29693433-296936... 28 2.9
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 28 2.9
04_03_0815 - 19949584-19950111,19950210-19950632 28 2.9
08_02_0788 + 21201533-21201808,21201923-21202012,21202501-212025... 28 3.9
04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345 27 5.1
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 27 5.1
10_05_0118 - 9338094-9338294,9338478-9338730,9339015-9339176,934... 27 6.8
06_03_1446 - 30220158-30220278,30220866-30222229 27 6.8
06_03_1434 - 30139990-30140110,30140698-30142061 27 6.8
06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624 27 6.8
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 27 6.8
03_06_0045 - 31259107-31259385,31259509-31259745,31260427-312604... 27 9.0
02_04_0043 + 19185969-19186036,19186205-19187342 27 9.0
01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820... 27 9.0
>11_06_0010 + 19235419-19236450
Length = 343
Score = 31.1 bits (67), Expect = 0.42
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 156 VIQCCHFCLCSICQIRLLSCKCCYVLLNS 70
++ C H CLC C+ +L +C C N+
Sbjct: 308 LLPCRHLCLCKACEPKLDACPVCLAAKNA 336
>09_04_0088 +
14494711-14494931,14496309-14496399,14496496-14496571,
14496671-14496755,14497381-14497450,14499111-14499316,
14499434-14499508,14501043-14501133,14501400-14501441,
14501661-14501741,14502010-14502089,14502254-14502365
Length = 409
Score = 30.7 bits (66), Expect = 0.55
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 156 VIQCCHFCLCSICQIRLLSCKCCYVLLNSHFCIC 55
++ C H+ LC C + SC C V + + +C
Sbjct: 363 LLPCRHYVLCEACSDKCRSCPICRVSIENKLPVC 396
>11_06_0007 - 19171122-19172036
Length = 304
Score = 29.9 bits (64), Expect = 0.96
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 156 VIQCCHFCLCSICQIRLLSCKCC 88
++ C H CLC C+ R +C C
Sbjct: 266 LLPCRHLCLCRACEARAEACPVC 288
>01_01_0688 -
5267781-5267814,5269851-5270153,5270605-5270870,
5273319-5273785,5273877-5274501
Length = 564
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -1
Query: 309 RPVDSALVIRLSLKAAPPCRVPVRGCGNGV 220
RP D A ++R S P V RGCG+ V
Sbjct: 79 RPADIAALLRASCARPAPFAVSARGCGHSV 108
>09_04_0076 + 14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = +3
Query: 234 NRVPAPGMGAQ--PSAIALSR-ARYRPGVAAIFPAHAQN 341
N +P+ + A+ P I LSR A+ PG++A+ P H QN
Sbjct: 1181 NTIPSQQLAARLPPPGIILSRIAQPAPGMSAVRPVHNQN 1219
>03_02_0458 +
8643804-8643904,8643994-8644091,8644206-8644504,
8645930-8646460
Length = 342
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 156 VIQCCHFCLCSICQIRLLSCKCC 88
++ C H CLC C+ +L C C
Sbjct: 308 LLPCRHLCLCKECESKLSFCPLC 330
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 28.3 bits (60), Expect = 2.9
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +3
Query: 60 YKSGYSTERNNICRKATEFGRCYTNKSGNTVLQMATL*RGIAGNMKQVTSFQTTPR 227
+K +ST RN+ CR A + G + L AT I+G+ VT +TPR
Sbjct: 739 FKLQHSTPRNDFCRIAAKNGILLRLVNTLHSLNEATRFASISGSGASVTQNGSTPR 794
>04_04_0959 +
29692740-29693035,29693102-29693267,29693433-29693612,
29693703-29693771,29693888-29694088,29694187-29694240,
29694325-29694386,29694488-29694620,29694789-29694899,
29695008-29695104,29695638-29695714,29696129-29696194,
29696431-29696583,29697392-29697447,29697524-29697584,
29697656-29697766,29698010-29698144,29698217-29698447,
29699001-29699075,29699161-29699282,29699381-29699453,
29699538-29699642,29699728-29699895,29700079-29700148,
29700224-29700375,29700574-29700651,29700744-29700836,
29700961-29701098,29701237-29701276,29701350-29701423,
29701777-29701911,29702345-29702464,29702778-29702939
Length = 1287
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 230 PQPRTGTRHGGAAFSDSLITSALSTGRRRHLP 325
P+ RTG GA F ++ +A++ G+ RH P
Sbjct: 3 PRKRTGAAGWGACFEEACGLAAVAAGQVRHSP 34
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 147 CCHFCLCSICQIRLLSCKCCY 85
CC CL S C++ S +CC+
Sbjct: 63 CCSDCLISDCEVHSSSGECCF 83
>04_03_0815 - 19949584-19950111,19950210-19950632
Length = 316
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -1
Query: 156 VIQCCHFCLCSICQIRLLSCKCCYVLLNS 70
++ C H CLC C+ +C C N+
Sbjct: 281 LLPCRHLCLCGACEAAADACPVCAATKNA 309
>08_02_0788 +
21201533-21201808,21201923-21202012,21202501-21202588,
21202811-21202944,21203086-21203135,21203248-21203340,
21203469-21203560,21203762-21203868,21204194-21204229
Length = 321
Score = 27.9 bits (59), Expect = 3.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 227 LPQPRTGTRHGGAAFSDSLITSALSTGRRR 316
L PRTG R G A + L+ TGRRR
Sbjct: 39 LLSPRTGRRRVGEAAVEQLVLRLPETGRRR 68
>04_03_0817 + 20003128-20003189,20003270-20003693,20003788-20004345
Length = 347
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -1
Query: 156 VIQCCHFCLCSICQIRLLSCKCCYVLLNS 70
++ C H CLC C+ + +C C N+
Sbjct: 312 LLPCRHLCLCRGCEAAVDACPVCAATKNA 340
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 27.5 bits (58), Expect = 5.1
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -1
Query: 324 GRWRRRPVDSALVIRLSLKAA-PPCRVPVRGCGNGVLFETRSLVSYYPRF 178
GR + SA + L LK PPC V +R CG RS + PRF
Sbjct: 264 GRDHLGAIGSADFVVLMLKILDPPCYVELRVCGGQCRRIPRSDLEILPRF 313
>10_05_0118 -
9338094-9338294,9338478-9338730,9339015-9339176,
9340166-9340296
Length = 248
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/26 (61%), Positives = 18/26 (69%)
Frame = -3
Query: 295 RARDKAIAEGCAPMPGAGTRLWQRGV 218
RAR K IAEGC+P P A TR + GV
Sbjct: 49 RAR-KDIAEGCSPSPTA-TRAMRAGV 72
>06_03_1446 - 30220158-30220278,30220866-30222229
Length = 494
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 320 LPRACAK*CDKN*HFSIIAVCRIEYQRILYSYTFLN 427
LPR C + C ++ F+I+++C + Q ++ + +N
Sbjct: 121 LPRPCQQYCLRDDDFAIVSICGDKQQYVVAALEMIN 156
>06_03_1434 - 30139990-30140110,30140698-30142061
Length = 494
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 320 LPRACAK*CDKN*HFSIIAVCRIEYQRILYSYTFLN 427
LPR C + C ++ F+I+++C + Q ++ + +N
Sbjct: 121 LPRPCQQYCLRDDDFAIVSICGDKQQYVVAALEMIN 156
>06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624
Length = 443
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 320 LPRACAK*CDKN*HFSIIAVCRIEYQRILYSYTFLN 427
LPR C + C ++ F+I+++C + Q ++ + +N
Sbjct: 121 LPRPCQQYCLRDDDFAIVSICGDKQQYVVAALEMIN 156
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 141 GNTVLQMATL*RGIAGNMKQVTSFQTTPRCHNRVPAPGMGAQPSAIALSRARYRP 305
G++ ++ L G++ +M S + TPR P + + A A++R+R RP
Sbjct: 343 GSSTRRLERLDSGLSASM---VSRRGTPRAGRGASTPKLSSSTDAAAMTRSRIRP 394
>03_06_0045 -
31259107-31259385,31259509-31259745,31260427-31260477,
31260541-31260908,31260992-31261250
Length = 397
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -1
Query: 333 HARGRWRRRPVDSALVIRLSLKAAPPCRVPVRGCGNGVLFETRSLVSYYPRFRAIGLPFV 154
HARG WR + + LV+++++ ++ V G ++ + S P FR +G P
Sbjct: 197 HARGAWRVKGIIQDLVVKIAV-CGLDLQLSVVSRTIGDVYLKKQEYSMDPVFRNVGPPIP 255
Query: 153 IQ 148
++
Sbjct: 256 LK 257
>02_04_0043 + 19185969-19186036,19186205-19187342
Length = 401
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -1
Query: 156 VIQCCHFCLCSICQIRLLSCKCCYVLLNS 70
++ C H CLC C+ +C C N+
Sbjct: 366 LLPCRHLCLCRGCEAAADACPVCAATKNA 394
>01_06_1201 -
35380338-35380496,35381200-35381322,35381521-35382066,
35382285-35382392,35382695-35383225,35383614-35383743,
35384225-35385081,35385303-35385408,35387119-35387230,
35389255-35389347,35389723-35389771,35389859-35389897,
35390671-35390757,35391613-35391873,35391957-35392166,
35392413-35393507
Length = 1501
Score = 26.6 bits (56), Expect = 9.0
Identities = 19/51 (37%), Positives = 23/51 (45%)
Frame = +3
Query: 138 SGNTVLQMATL*RGIAGNMKQVTSFQTTPRCHNRVPAPGMGAQPSAIALSR 290
+ +TVLQ L A + KQ S P PAP +P A ALSR
Sbjct: 835 AASTVLQSLPLSASAADDEKQAASPAPGPAA---APAPTSAGEPEAEALSR 882
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,332
Number of Sequences: 37544
Number of extensions: 291245
Number of successful extensions: 949
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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