Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P04
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   3.5  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   3.5  

>U21308-3|AAB93322.2|  321|Caenorhabditis elegans Hypothetical
           protein ZK1290.5 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 206 LVSNNTPLPQPRTGTRHGGAAFSDSLITSALSTGRR 313
           ++SNN  +P    GT H G  + D+++ S    G R
Sbjct: 6   VLSNNVEMPLIGLGTTHSGGYYHDAVLHSIKKCGYR 41


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 153 IQCCHFCLCSICQIRLLSCKC 91
           + C H C C +C     SC+C
Sbjct: 633 VDCAHKCSCKLCDPSTGSCRC 653


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 153 IQCCHFCLCSICQIRLLSCKC 91
           + C H C C +C     SC+C
Sbjct: 633 VDCAHKCSCKLCDPSTGSCRC 653


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,668,376
Number of Sequences: 27780
Number of extensions: 241200
Number of successful extensions: 640
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)