Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P03
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    27   1.0  
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom...    27   1.3  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    25   4.1  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    25   4.1  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   5.4  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    25   5.4  
SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|c...    24   7.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    24   9.4  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    24   9.4  

>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 366 WVIWRHIAQHRVETLLVRYVLYS-SDLVPRVYVCELASDNSRAIAD 232
           + IW    +H+   LL  Y   + +DLV  +  C  +SD+ RAI D
Sbjct: 415 YAIWSVHDEHQFSELLAFYHRRALNDLVEELGSCPRSSDSCRAILD 460


>SPAC25H1.08c |||ribosome biogenesis protein
           Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 399

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 279 PSEQGPSCRVRSGPARFPPGAERCAS 356
           P+   P CR+ S   RF PG E  A+
Sbjct: 219 PATGAPECRMSSDDHRFDPGNEETAA 244


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 88  VTCGSTFLSSDGNLAGPLRSNTEPS 14
           +T    F S  GN   PLR+N E S
Sbjct: 110 LTKADAFFSKSGNTVDPLRNNYETS 134


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 22  LCCFVTDPRGYRPMIKMLSHTLLLLVAVAMTSGDVSH 132
           +C   + P G+R ++K  +HT    +A   T G+ ++
Sbjct: 77  VCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN 113


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 220 EHTEVSDGSGVVRGKFAYVDPRNKVRAVEYVADQQGFHPVLSDVPPDHPADS 375
           E++ ++    V R +  Y DP NK    E   D   +  +L D      ADS
Sbjct: 301 ENSMINKKDLVERTRIDYSDPNNKTFNPEIYNDTDFYQSLLKDFINSRMADS 352


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 219 RTYRSQRWLWSCQRQVRIRRPSEQ 290
           R +RSQ W    Q+Q  + +P+E+
Sbjct: 129 RIFRSQNWHARRQKQFHLMKPAEE 152


>SPAC23C4.03 |||haspin related kinase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 488

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 332 WKPCWSATYSTARTL 288
           W+ CWS  Y T + L
Sbjct: 278 WRECWSVFYETLKIL 292


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 130 GKRHRWSWPRLPARVTC 80
           GKRHR   PR+ A  TC
Sbjct: 58  GKRHREFLPRVTAYCTC 74


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -1

Query: 106 PRLPARVTCGSTFLSSDGNLAGPLRSNTEPSCR 8
           PR P   TC + F     NLA   R+ T  S R
Sbjct: 19  PRFPLNRTCLARFADGRKNLATDNRTQTYQSWR 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,539,752
Number of Sequences: 5004
Number of extensions: 26333
Number of successful extensions: 78
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)