Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P03
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0309 - 15622877-15623710 31 0.31
06_03_0136 + 17056256-17056420,17056864-17057036,17057272-170572... 29 1.3
02_04_0651 - 24737953-24738114,24738205-24738375,24738534-247386... 27 3.8
01_06_0581 - 30386018-30386440 27 3.8
10_07_0102 + 12878740-12878773,12878917-12879014,12879717-12879875 27 5.1
07_03_0698 - 20765305-20768526 27 5.1
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 27 5.1
01_01_0451 + 3355782-3355823,3356410-3357222 27 5.1
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 27 6.7
12_02_0628 + 21357876-21359921 26 8.9
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 26 8.9
01_01_0190 + 1656376-1656565,1656655-1657388 26 8.9
>08_02_0309 - 15622877-15623710
Length = 277
Score = 31.1 bits (67), Expect = 0.31
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 246 WSCQRQVRIRRPSEQGPSCRVRSGPARFPPGAERCASRSPSRL 374
W+ + +R P + P R PPG E CA+R RL
Sbjct: 60 WAAPSVIDLREPPPPSATTAPPPPPPRAPPGGEGCAARLRGRL 102
>06_03_0136 +
17056256-17056420,17056864-17057036,17057272-17057297,
17057524-17057922,17058190-17058265,17058432-17058507,
17058930-17059013,17059446-17059570,17060146-17060389,
17060968-17061031,17061218-17061726
Length = 646
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = +3
Query: 201 PGTRGPRTYRSQRWLWSCQRQVRIRRPSEQGPSCRVRSGPARFPPGAER 347
PG GP RWLW + SE+ S R R PPGA+R
Sbjct: 524 PGINGPIPENGDRWLWDSTPP----QYSERYHSSDSREERDRGPPGADR 568
>02_04_0651 -
24737953-24738114,24738205-24738375,24738534-24738632,
24738738-24738938,24739234-24739341,24739531-24739810,
24739962-24740089
Length = 382
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -2
Query: 351 HIAQHRVETLLVRYVLYSSDLVPRVYVCELASDNSRAIADFGMFAVHVSR 202
H+ + ++ Y+ SSD VP++++ DN + +A G + +S+
Sbjct: 249 HMLKSQIPENRASYLKLSSDNVPQLWIVHNIDDNEQKMAPKGTIFIPISQ 298
>01_06_0581 - 30386018-30386440
Length = 140
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 130 GKRHRWSWPRLPARVTCGSTFLSSD 56
G+R RW W RLP G F S +
Sbjct: 51 GRRRRWGWLRLPCVTFEGRGFTSKE 75
>10_07_0102 + 12878740-12878773,12878917-12879014,12879717-12879875
Length = 96
Score = 27.1 bits (57), Expect = 5.1
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 246 WSCQRQ--VRIRRPSEQGPSCRVRSGPARFPP 335
W CQRQ V+ EQ P R S +RF P
Sbjct: 63 WGCQRQRGVQQNTDQEQQPDWRTSSERSRFQP 94
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 375 RVGWVIWRHIAQHRVETLLVRYVLYSSDLVPR 280
R GW+ W +A+HRV T + + + ++ R
Sbjct: 89 RCGWLPWEMVARHRVVTRIRELKIQAREISER 120
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 27.1 bits (57), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 207 TRGPRTYRSQRWLWSCQRQVRIRRPSEQGPSCRVRSGP 320
T G R++RS W W+ +R RP+ S + + P
Sbjct: 340 THGARSHRS--WAWALASPMRALRPTSSSSSKSIMAAP 375
>01_01_0451 + 3355782-3355823,3356410-3357222
Length = 284
Score = 27.1 bits (57), Expect = 5.1
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +3
Query: 21 SVLLRNGPARLPSDDKN 71
S+++ NGPA +PSD+K+
Sbjct: 157 SLMMSNGPATIPSDEKD 173
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 244 SGVVRGKFAYVDPRN-KVRAVEYVADQQGFHPVLSDVPPDHPADSESV 384
S V+G F Y+DP K R + +D F VL +V PA +S+
Sbjct: 656 STAVKGSFGYLDPEYFKTRQLTDRSDVYSFGVVLFEVLCARPAIDQSL 703
>12_02_0628 + 21357876-21359921
Length = 681
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 204 GTRGPRTYRSQRWLWSCQRQVRIRRPS 284
G RGP + + QR WS Q+Q R RR S
Sbjct: 26 GARGPSSGQGQR--WSSQQQQRGRRGS 50
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 26.2 bits (55), Expect = 8.9
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = +3
Query: 213 GPRTYRSQRWLWSCQRQVRIRRPSEQGPSCRVRSGPARFPPGAERC 350
G R+ +RW W C R P E+ R G AR RC
Sbjct: 177 GRRSEAGRRWRWRCSETAR-APPQERRRGGRCTCGVARLNLPFVRC 221
>01_01_0190 + 1656376-1656565,1656655-1657388
Length = 307
Score = 26.2 bits (55), Expect = 8.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -3
Query: 332 WKPCWSATYSTARTLFRGSTYANLPLTTPEPSLTSVCSRSTC 207
W W S ++ RG +P+ P PS T+V TC
Sbjct: 89 WSGNWQLCQSAVESVLRG-----MPIAQPPPSATAVPPLPTC 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,302
Number of Sequences: 37544
Number of extensions: 223165
Number of successful extensions: 726
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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