Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P03
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    30   0.64 
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    30   0.64 
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    30   0.64 
Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical pr...    27   6.0  
L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 210 RGPRTYRSQRW-----LWSCQRQVRIRRPSEQGPSCRVRSGPARFP 332
           RGPRT+R  +W     L    + V ++RP        VRSG A+ P
Sbjct: 320 RGPRTHRMPQWVRVVFLQFLPKLVCMKRPKSASERSAVRSGMAQLP 365


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 210 RGPRTYRSQRW-----LWSCQRQVRIRRPSEQGPSCRVRSGPARFP 332
           RGPRT+R  +W     L    + V ++RP        VRSG A+ P
Sbjct: 320 RGPRTHRMPQWVRVVFLQFLPKLVCMKRPKSASERTAVRSGMAQLP 365


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 210 RGPRTYRSQRW-----LWSCQRQVRIRRPSEQGPSCRVRSGPARFP 332
           RGPRT+R  +W     L    + V ++RP        VRSG A+ P
Sbjct: 320 RGPRTHRMPQWVRVVFLQFLPKLVCMKRPKSASERSAVRSGMAQLP 365


>Z99281-6|CAB54458.2|  625|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9b protein.
          Length = 625

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/37 (45%), Positives = 17/37 (45%)
 Frame = +3

Query: 261 QVRIRRPSEQGPSCRVRSGPARFPPGAERCASRSPSR 371
           Q R RR   Q  S R  S P R      R  SRSPSR
Sbjct: 145 QRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSR 181


>Z99281-5|CAB54457.1|  553|Caenorhabditis elegans Hypothetical
           protein Y57G11C.9a protein.
          Length = 553

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/37 (45%), Positives = 17/37 (45%)
 Frame = +3

Query: 261 QVRIRRPSEQGPSCRVRSGPARFPPGAERCASRSPSR 371
           Q R RR   Q  S R  S P R      R  SRSPSR
Sbjct: 145 QRRRRRSDSQESSKRSASPPVRRGRSKSRSRSRSPSR 181


>L07144-9|AAK21441.1|  737|Caenorhabditis elegans Hypothetical
           protein R05D3.2 protein.
          Length = 737

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 228 RSQRWLWSCQRQVRIRRPSEQGPSCRVRSG 317
           R Q W W CQ +  IRR S+   +  +  G
Sbjct: 703 RRQIWKWICQLRCGIRRESDADETIEILRG 732


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,916,974
Number of Sequences: 27780
Number of extensions: 167962
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)