Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P03
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    31   0.006
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   1.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   1.6  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   6.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    20   8.6  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 30.7 bits (66), Expect = 0.006
 Identities = 21/66 (31%), Positives = 28/66 (42%)
 Frame = +1

Query: 181 SYTAGRYPGHVDREHTEVSDGSGVVRGKFAYVDPRNKVRAVEYVADQQGFHPVLSDVPPD 360
           S+     P  VD E   VS GS       +Y  P  +  ++ YVAD+ GF    S +P  
Sbjct: 53  SHQESGQPKQVDNETPVVSQGSD------SYTAPDGQQVSITYVADENGFQVQGSHIPTA 106

Query: 361 HPADSE 378
            P   E
Sbjct: 107 PPIPPE 112


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 177 VLLHSGTLPGTRGPRTYRSQRWLWSCQRQVRIRRPSEQGPS 299
           V +H  T    R P TYR Q+     Q  ++++RPS+   S
Sbjct: 276 VHVHKQTAIAFRTP-TYRMQQVEQPVQVYIQLKRPSDGATS 315


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 177 VLLHSGTLPGTRGPRTYRSQRWLWSCQRQVRIRRPSEQGPS 299
           V +H  T    R P TYR Q+     Q  ++++RPS+   S
Sbjct: 276 VHVHKQTAIAFRTP-TYRMQQVEQPVQVYIQLKRPSDGATS 315


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -2

Query: 354 RHIAQHRVETLLVRYVLYSSDLVPRVYVCELAS----DNSRAIADFG 226
           RH+A+    T  VRY  Y   L     + E  S    D +  IA  G
Sbjct: 156 RHLAETPKNTSAVRYTHYIGTLATNDNILESISYVKDDGTEGIAKSG 202


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 127 KRHRWSWPRLPARVT 83
           ++  WS PR PA+ T
Sbjct: 164 RKRSWSRPREPAQTT 178


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +2

Query: 176 CSPTQRDVTRDTW 214
           C PTQR +++  W
Sbjct: 25  CQPTQRTMSKIQW 37


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +1

Query: 295 RAVEYVADQQGFHPVLSDVPPDHPAD 372
           R  E V   +G + V  D+PPD+  D
Sbjct: 14  RPSEPVYVPKGDNKVAFDIPPDYLPD 39


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 81  VAQHFYHR 58
           VA+HFYH+
Sbjct: 151 VARHFYHK 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,429
Number of Sequences: 438
Number of extensions: 2150
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)