Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_P02
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   1.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   2.1  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   2.1  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          25   2.8  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   8.5  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    23   8.5  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    23   8.5  
SPAC1782.05 |||phosphotyrosyl phosphatase activator homolog|Schi...    23   8.5  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 308 QKLLCMLVNTE*LINLNNFYFLQSLNSTTHVFNIL 204
           Q+L+  L     L +L     L+ LN   HVFNIL
Sbjct: 480 QQLIGALSEVYGLTHLTELEILEHLNKKEHVFNIL 514


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 299 LCMLVNTE*LINLNNFYFLQSLNSTTHVFNIL 204
           +C   NTE   N+  + F  S NS    FNIL
Sbjct: 468 ICYTGNTESRANIREYEFYLSTNSRKLKFNIL 499


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 302 LLCMLVNTE*LINLNNFYFLQSLNSTTHVFNI 207
           +LC++  T+  I   N YF+Q LN TT +F++
Sbjct: 28  ILCIINQTQHNIAFQNIYFIQ-LN-TTSIFSV 57


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 272 LINLNNFYFLQSLNSTTHVFNILDLVGHILSFLI 171
           L++  +  F  S+N   +V  + D+ G I+ FL+
Sbjct: 110 LLSCKDSSFRISINFIDYVLGVCDMTGEIMRFLV 143


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 89  HLRWLIITILYIFVLVIASNS*SPDQYGLKMI 184
           H+  LI T+L IFV++      +P  YG K +
Sbjct: 725 HVIELICTLLLIFVVIYCFTFFAPMTYGDKSL 756


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 61  FKLVILNAIPFTMVNYNNFVYFCISNSK 144
           F LV+ +   +++ +  NF+Y  + N+K
Sbjct: 239 FSLVLASETIYSLPSLENFLYMLLKNTK 266


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 138 ITNTKIYKIVIINHRKWN 85
           I NTK Y+++IIN    N
Sbjct: 33  IDNTKDYRVIIINDESLN 50


>SPAC1782.05 |||phosphotyrosyl phosphatase activator
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 233 NSTTHVFNILDLVGHILSFLIHID-LGSNY 147
           +S  HV NILD VG I      ID +GS +
Sbjct: 59  SSIEHVLNILDRVGEIKQENPAIDNMGSRF 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,166,522
Number of Sequences: 5004
Number of extensions: 19817
Number of successful extensions: 43
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)