Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P02
(317 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine re... 27 2.9
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 26 5.1
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 26 5.1
Z81142-6|CAB03508.1| 344|Caenorhabditis elegans Hypothetical pr... 26 5.1
U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein. 26 5.1
U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of... 26 5.1
AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlec... 26 5.1
AF016415-7|AAW88412.1| 296|Caenorhabditis elegans Serpentine re... 26 5.1
Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr... 25 8.9
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr... 25 8.9
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 25 8.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 25 8.9
>AF038606-8|AAB92022.2| 313|Caenorhabditis elegans Serpentine
receptor, class z protein60 protein.
Length = 313
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 254 FYFLQSLNSTTHVFNILDLVGHILSFLIH 168
F+ +Q+L+ THVFN+L + I F+++
Sbjct: 102 FFAIQALSLVTHVFNLLLSLLGIAKFILY 130
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 105 INHRKWNSIQYH*FK*QITIRLND 34
IN +WN I+ K Q+TI+LND
Sbjct: 2621 INPNEWNVIKIKNDKNQVTIQLND 2644
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 105 INHRKWNSIQYH*FK*QITIRLND 34
IN +WN I+ K Q+TI+LND
Sbjct: 2621 INPNEWNVIKIKNDKNQVTIQLND 2644
>Z81142-6|CAB03508.1| 344|Caenorhabditis elegans Hypothetical
protein ZK1037.9 protein.
Length = 344
Score = 26.2 bits (55), Expect = 5.1
Identities = 7/24 (29%), Positives = 18/24 (75%)
Frame = +1
Query: 52 YLLFKLVILNAIPFTMVNYNNFVY 123
+++ V++ +IPF+++NYN+ +
Sbjct: 159 FIIISAVVIISIPFSLLNYNDIQF 182
>U29515-1|AAC06328.1| 449|Caenorhabditis elegans fem-2 protein.
Length = 449
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 85 IPFTMVNYNNFVYFCISNSK**LEPRSIWIKNDKIWPTRSKILK 216
+ F V YN +Y S + E + ++ NDKIWP KIL+
Sbjct: 108 VAFRDVQYNPDIYVTDSTT----EAKKLF--NDKIWPAIDKILQ 145
>U28412-8|AAC46598.1| 449|Caenorhabditis elegans Feminization of xx
and xo animalsprotein 2 protein.
Length = 449
Score = 26.2 bits (55), Expect = 5.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +1
Query: 85 IPFTMVNYNNFVYFCISNSK**LEPRSIWIKNDKIWPTRSKILK 216
+ F V YN +Y S + E + ++ NDKIWP KIL+
Sbjct: 108 VAFRDVQYNPDIYVTDSTT----EAKKLF--NDKIWPAIDKILQ 145
>AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlecan
protein.
Length = 925
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 105 INHRKWNSIQYH*FK*QITIRLND 34
IN +WN I+ K Q+TI+LND
Sbjct: 171 INPNEWNVIKIKNDKNQVTIQLND 194
>AF016415-7|AAW88412.1| 296|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 33 protein.
Length = 296
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 46 YCYLLFKLVILNAIPFTMVNYNNFVYF 126
+C +++ ++ +N P MVNYN+F+ +
Sbjct: 59 FCNIVYTILSMN-FPEFMVNYNSFIVY 84
>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 242 QSLNSTTHVFNILDLVGHILSFLIHID 162
Q++ S+ H F+ILD + H L L++++
Sbjct: 796 QTILSSPHAFSILDHIRHWLDTLLNLN 822
>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical
protein B0365.7 protein.
Length = 2769
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 242 QSLNSTTHVFNILDLVGHILSFLIHID 162
Q++ S+ H F+ILD + H L L++++
Sbjct: 796 QTILSSPHAFSILDHIRHWLDTLLNLN 822
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 36 HLSVLLSVI*ISDIECYSIYDG 101
H+SV L+++ + D Y IYDG
Sbjct: 266 HMSVSLNLVDLPDAIAYPIYDG 287
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 36 HLSVLLSVI*ISDIECYSIYDG 101
H+SV L+++ + D Y IYDG
Sbjct: 1329 HMSVSLNLVDLPDAIAYPIYDG 1350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,192,698
Number of Sequences: 27780
Number of extensions: 104820
Number of successful extensions: 249
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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