Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_P01
(278 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 101 2e-23
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 36 0.001
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 33 0.006
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 33 0.007
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 32 0.017
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 32 0.017
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 31 0.023
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 31 0.023
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 31 0.023
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc... 31 0.030
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 30 0.053
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 30 0.070
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 29 0.092
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 29 0.12
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 29 0.16
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 29 0.16
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 29 0.16
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 28 0.21
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 28 0.21
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 28 0.21
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 28 0.28
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 27 0.37
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 27 0.37
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 27 0.37
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 27 0.49
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 27 0.65
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 27 0.65
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 0.86
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo... 26 0.86
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 26 0.86
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 25 1.5
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr... 25 2.0
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 2.0
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 2.0
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 24 3.5
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 24 3.5
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 24 3.5
SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|c... 24 4.6
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 23 6.1
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ... 23 6.1
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 23 8.0
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 23 8.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 23 8.0
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 23 8.0
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 23 8.0
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 101 bits (241), Expect = 2e-23
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = +1
Query: 49 MSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLY 228
M E L LR TL GH+GW+T ++T P+ PD++LS SRDK++I+W L RD+ +YG+ Q+RL
Sbjct: 1 MPEQLVLRATLEGHSGWVTSLSTAPENPDILLSGSRDKSIILWNLVRDDVNYGVAQRRLT 60
Query: 229 GHSHFISDVVLSSDGN 276
GHSHF+SD LS D +
Sbjct: 61 GHSHFVSDCALSFDSH 76
Score = 36.3 bits (80), Expect = 8e-04
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMI--LSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVV 258
GH+ W++ + +P PD + +S+ DK + VW L ET + L YGH+ ++S V
Sbjct: 146 GHSDWVSCVRFSPN-PDNLTFVSAGWDKAVKVWDL---ET-FSLRTSH-YGHTGYVSAVT 199
Query: 259 LSSDGN 276
+S DG+
Sbjct: 200 ISPDGS 205
Score = 27.1 bits (57), Expect = 0.49
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVV 258
L GH+ +++ A + LS+S DKT+ +W L + E ++ + GH+ + V
Sbjct: 59 LTGHSHFVSDCALSFD-SHYALSASWDKTIRLWDLEKGECTH-----QFVGHTSDVLSVS 112
Query: 259 LSSD 270
+S D
Sbjct: 113 ISPD 116
Score = 27.1 bits (57), Expect = 0.49
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVLS 264
GH + ++ +P ++ S SRDKT+ +W + Y + GHS ++S V S
Sbjct: 103 GHTSDVLSVSISPDNRQVV-SGSRDKTIKIWNII-GNCKYTITDG---GHSDWVSCVRFS 157
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 35.5 bits (78), Expect = 0.001
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 180
L GH W+ + +P +MILSSS D ++IVW+
Sbjct: 264 LMGHEDWVMSVDWHPT-KEMILSSSADSSMIVWE 296
Score = 31.9 bits (69), Expect = 0.017
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Frame = +1
Query: 79 LCGHNGWIT---QIATNPKYPD-MILSSSRDKTLIVWKLTRD 192
+ GH+G I ++ATN +Y ILS + DKTL +W+L +
Sbjct: 47 MAGHSGRINCVCELATNSEYRSPFILSGASDKTLRLWQLEEE 88
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 33.5 bits (73), Expect = 0.006
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 64 KLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHF 243
KL +LCGH ++ + +YP ILS S D+T+ +W + + L GHSH+
Sbjct: 86 KLLFSLCGHMDYVRVCTFHHEYP-WILSCSDDQTIRIWN-WQSRNCIAI----LTGHSHY 139
Query: 244 I 246
+
Sbjct: 140 V 140
Score = 29.1 bits (62), Expect = 0.12
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 16 WLVSCSLGI---IQMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLT 186
W++SCS I ++ L GH+ ++ A +P D+I+S+S D+T+ VW ++
Sbjct: 109 WILSCSDDQTIRIWNWQSRNCIAILTGHSHYVMCAAFHPS-EDLIVSASLDQTVRVWDIS 167
Score = 29.1 bits (62), Expect = 0.12
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 189
T GH ++ +P + ++ILS+S DKT+ VW L R
Sbjct: 251 TCRGHFNNVSCCLFHP-HQELILSASEDKTIRVWDLNR 287
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 33.1 bits (72), Expect = 0.007
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 189
TL GH +T+I+ +P ++ S+S D+ +VW L+R
Sbjct: 320 TLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSR 357
Score = 28.7 bits (61), Expect = 0.16
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 88 HNGWITQIATNPKYPDMILSSSRDKTLIVWKL 183
H+G I +A NP ++ + S DKT+ +W L
Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALWDL 311
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.9 bits (69), Expect = 0.017
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGL----PQ---KRLY-GHSH 240
GH + IA +P ++LS S DKT+ VW+L + S GL P+ K Y GH+
Sbjct: 482 GHKESVYSIAFSPD-SSILLSGSLDKTIKVWEL-QATRSVGLSAIKPEGICKATYTGHTD 539
Query: 241 FISDVVLSSD 270
F+ V +S D
Sbjct: 540 FVLSVAVSPD 549
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 31.9 bits (69), Expect = 0.017
Identities = 24/73 (32%), Positives = 35/73 (47%)
Frame = +1
Query: 55 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGH 234
+T K TL GH + Q A + +++SSS+D TL VW + + + LP GH
Sbjct: 419 KTGKFLATLRGHVAAVYQCAWSTD-SRLLVSSSQDTTLKVWDVRSKKMKFDLP-----GH 472
Query: 235 SHFISDVVLSSDG 273
+ V S DG
Sbjct: 473 EDQVFAVDWSPDG 485
Score = 25.0 bits (52), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 177
TL GH IT + + + I SSS DKT+ +W
Sbjct: 264 TLSGHTAPITCVRWGGQ--NWIYSSSYDKTIRIW 295
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 31.5 bits (68), Expect = 0.023
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 76 TLCGHNGWITQIA-TNPKYPDMILSSSRDKTLIVWKLT 186
TL GH+G + Q+ +PK+ ++ S+S D +IVW+ T
Sbjct: 48 TLRGHSGPVWQLGWAHPKFGTILASASYDGHVIVWRET 85
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.5 bits (68), Expect = 0.023
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 55 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 177
E+ KL TL GH + +A NP P S+ D T+ +W
Sbjct: 458 ESGKLLATLSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIW 498
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 31.5 bits (68), Expect = 0.023
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 177
TL GH ++ ++ +P+ P M S S D T VW
Sbjct: 350 TLSGHKNLVSGLSASPENPYMFASVSHDNTCRVW 383
>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 31.1 bits (67), Expect = 0.030
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 52 SETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 183
S T LR L GH G + + +P + D+ILS S D+T+ + +L
Sbjct: 297 SATGDLRYVLPGHEGSVNHVDFHP-HQDIILSCSSDRTIFLGEL 339
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 30.3 bits (65), Expect = 0.053
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYG 207
GH ++ I +P D +S++ DKTL +WK+ + G
Sbjct: 106 GHTDIVSSIEVSP-IEDQFVSTANDKTLKLWKMNQSSRCLG 145
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 29.9 bits (64), Expect = 0.070
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGL 210
T GH+ ++ +A NPK + SS D T+ VW ++ L
Sbjct: 136 TFEGHSRYVMSLAINPKDTNTFASSCLDGTVKVWSFGSSVANFTL 180
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 29.5 bits (63), Expect = 0.092
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 73 GTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 183
G L GH WI +A NP D++LS+ + + +W +
Sbjct: 223 GQLRGHAAWIFAVAFNP-VGDLLLSADVEGKIKIWDI 258
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 29.1 bits (62), Expect = 0.12
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVLS 264
GH I+ + P ++LS S D + +W++ D + + GH+ I D+ S
Sbjct: 264 GHTKGISCLRFFPISGHLLLSGSMDNQIKIWEVYHDRSLL----RTFQGHARPIRDLSFS 319
Query: 265 SDG 273
DG
Sbjct: 320 QDG 322
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 28.7 bits (61), Expect = 0.16
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 88 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSY 204
H+ ++T IA +PK LS S D L +W + S+
Sbjct: 348 HSDFVTSIAFHPKDDRFFLSGSLDCKLRLWSIKEKAVSF 386
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.16
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 31 SLGIIQMSETLKLRGTLC---GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDET 198
+L +I ++E KL + GH + NP + ++ S D +++WK+ D T
Sbjct: 58 ALAVIPLNERGKLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDYT 116
Score = 25.8 bits (54), Expect = 1.1
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 16 WLVSCSLGIIQMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 177
W V +++ E + L GH+ + + +P +++ SSS D T+ +W
Sbjct: 109 WKVPEDYTVMEPYEDVHPIAELKGHSRKVGLVQYHPTAANVLASSSADNTIKLW 162
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 28.7 bits (61), Expect = 0.16
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +1
Query: 139 ILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVLSSD 270
+ S RD L W + D P ++ HS +++D+ L+ D
Sbjct: 47 LYSGGRDGQLFGWDIGYDYGKASQPLAKIQAHSAWVNDIALTHD 90
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.3 bits (60), Expect = 0.21
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQ 216
L GH ++ P+ P +LSS +D +VW + E+ P+
Sbjct: 256 LTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWNVETGESLGSFPR 301
Score = 24.2 bits (50), Expect = 3.5
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +1
Query: 40 IIQMSETLKLRGTLCGHNGWIT-QIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQ 216
I++ E T NG I + N P+++ S + VW + + + LP+
Sbjct: 99 ILKSDEASASIATYKSENGSILGPLDFNRLQPNLLASGDNKGDVWVWDIKHPQQPFALPK 158
Query: 217 KRLYGHSHFIS 249
+ H +S
Sbjct: 159 QNRSSEVHVVS 169
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 0.21
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 177
L H+G I+ ++ NP P + + S D+ + +W
Sbjct: 379 LQAHDGPISCLSVNPSVPSFVATGSTDRVVKLW 411
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 28.3 bits (60), Expect = 0.21
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVLS 264
GH + + +P+ + + ++S DKT+ W L + G+ ++ H +DV+
Sbjct: 220 GHQSNVYCLLFDPQDSEALWTASADKTVREWSLYQ-----GIHEETRMEHPDVCTDVLTL 274
Query: 265 SDGN 276
+DGN
Sbjct: 275 ADGN 278
Score = 23.4 bits (48), Expect = 6.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 183
GH +T+I Y ++SSS D+T+ VW L
Sbjct: 304 GHYESVTKILQWKSY---LISSSLDQTIRVWDL 333
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 27.9 bits (59), Expect = 0.28
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Frame = +1
Query: 85 GHNGWITQIATNPK----YPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLY---GHSHF 243
GH +T +A P YP + SSS+D+TL + L + ++ H
Sbjct: 408 GHTASVTAVALGPLDVNGYPTFLASSSQDRTLKRFNLGSQLNKSDFSNRAVWTIKAHDRD 467
Query: 244 ISDVVLSSDG 273
++ + +S DG
Sbjct: 468 VNAIQVSKDG 477
Score = 27.5 bits (58), Expect = 0.37
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLP 213
GH+ I + P +LS SRDKT+ VW + + +P
Sbjct: 187 GHSSVIRGLTFEPT-GSFLLSGSRDKTVQVWNIKKRSAVRTIP 228
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 0.37
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWK 180
TL GH + ++A D+I+S+S D TL VWK
Sbjct: 572 TLRGHTDSVREVAC---LGDLIVSASYDGTLRVWK 603
Score = 24.6 bits (51), Expect = 2.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 130 PDMILSSSRDKTLIVWKL 183
P I+SSSRD T+ +W L
Sbjct: 522 PPYIISSSRDCTIRLWSL 539
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 27.5 bits (58), Expect = 0.37
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +1
Query: 70 RGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVW-----KLTRDETSYGLPQKRLYGH 234
+ L GH + NP P + + + D+ + +W T ET P + + H
Sbjct: 175 QAVLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQTQSFTSSETKVISPIAKYHRH 234
Query: 235 SHFISDV 255
+ ++DV
Sbjct: 235 TDIVNDV 241
Score = 26.6 bits (56), Expect = 0.65
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 88 HNGWITQIATNPKYPDMILSSSRDKTLIVWKL 183
H+ I +A NP ++ ++S DKT+ +W L
Sbjct: 280 HSKAINAVAINPFNDYLLATASADKTVALWDL 311
Score = 25.4 bits (53), Expect = 1.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTR 189
TL GH + + +P ++ SSS D+ + +W L +
Sbjct: 320 TLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEK 357
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 27.5 bits (58), Expect = 0.37
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL----TRDETSY---GLPQKRLYGHS 237
L GH + +A +P ++S S D T+ +W+L + Y G+ ++ GH
Sbjct: 454 LHGHEESVYSVAFSPD-GKYLVSGSLDNTIKLWELQCVSNVAPSMYKEGGICKQTFTGHK 512
Query: 238 HFISDVVLSSDG 273
FI V +S DG
Sbjct: 513 DFILSVTVSPDG 524
Score = 27.1 bits (57), Expect = 0.49
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 100 ITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVLSSDG 273
+T + +P I + S DK + +W TS G ++L+GH + V S DG
Sbjct: 420 VTTVMFSPD-GQFIAAGSLDKVIRIW------TSSGTLVEQLHGHEESVYSVAFSPDG 470
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 0.49
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 139 ILSSSRDKTLIVWKLTRDETSYGLP 213
I+S SRD TL VWKL ++ LP
Sbjct: 460 IVSGSRDHTLRVWKLPKNTDPPYLP 484
Score = 25.0 bits (52), Expect = 2.0
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFIS 249
L GH+ I + P+ ++ +S S DK++ VW L+ Y L GH F++
Sbjct: 543 LRGHSLRIYSVLYEPER-NICISGSMDKSIRVWDLSTGTCKYVLE-----GHDAFVT 593
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.6 bits (56), Expect = 0.65
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 76 TLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSY 204
+L GH G + + PK ++ S S D T +W + + +S+
Sbjct: 184 SLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKVSSSF 226
Score = 24.6 bits (51), Expect = 2.6
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 55 ETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLP-QKRLYG 231
+TL H IT + P + SSS D TL VW ++ + +Y + +Y
Sbjct: 91 DTLNAVPARTSHKFGITDLHWFPFDNGIFTSSSFDHTLKVWDVSTLQEAYTFTMEDMIYS 150
Query: 232 HS 237
H+
Sbjct: 151 HA 152
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 0.65
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYG-LPQKRLYGHSHFISDVVL 261
GH + + + Y I+SSSRD T VW+L D TS L GH ++ V
Sbjct: 301 GHTDNVLGVVVSENY---IISSSRDHTARVWRL--DATSPAEACMHVLRGHLASVNSVQY 355
Query: 262 SS 267
SS
Sbjct: 356 SS 357
Score = 25.4 bits (53), Expect = 1.5
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 124 KYPDMIL-SSSRDKTLIVWKLTRDETSYGLPQKRLYGHS 237
+Y D I+ S S+D+T+ VW + Y +LYGHS
Sbjct: 228 QYDDEIMVSGSKDRTVSVWDVNSRFILY-----KLYGHS 261
Score = 23.0 bits (47), Expect = 8.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLT 186
L GH + + + K +I+++S D+TL W +T
Sbjct: 343 LRGHLASVNSVQYSSK-TGLIVTASSDRTLRTWDIT 377
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 0.86
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +1
Query: 142 LSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVL 261
L++S D TL +W L+ ++ ++ LYGH + I+ V +
Sbjct: 2311 LTASLDLTLRLWTLSTNKPIKASLKRVLYGHRYRITCVTV 2350
>SPCC63.06 |||human WDR89 family WD repeat
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 0.86
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 13 RWLVSCSLGIIQMSETLKLRGTLCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRD 192
R L S L ++ + L +R HN IT + +PK +++L+ S D + + T++
Sbjct: 121 RSLASVQLWDVRSEQKL-IRQWNDAHNDDITHLQFHPKDNELLLTGSVDGLVSLLDTTKE 179
Query: 193 ETS 201
E S
Sbjct: 180 EDS 182
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 26.2 bits (55), Expect = 0.86
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 139 ILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVLSSDG 273
+L ++DKT VW +T L GH + IS + L+SDG
Sbjct: 247 LLFIAKDKTCEVWDSISSKTITSLT-----GHENRISSLALTSDG 286
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 1.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVW 177
L GH +TQI N D++ S ++DK + VW
Sbjct: 6 LQGHERPLTQIKYNHD-GDLLFSCAKDKVINVW 37
>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 25.0 bits (52), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +1
Query: 154 RDKTLI-VWKLTRDETSYGLPQKRL 225
+DKT V K+ +DE +Y LPQK +
Sbjct: 186 KDKTNAHVNKIPQDEVNYSLPQKNI 210
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 2.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 195
L HNG + + +P + S RDKT+ +W T ++
Sbjct: 217 LAAHNGVVLCVNYSPNGV-FLASCGRDKTIRIWDSTSNK 254
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 2.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWK 180
GH G + ++ +P I S + D L +WK
Sbjct: 371 GHKGTVNEVDFDPFEAQCIASVADDNELHIWK 402
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 24.2 bits (50), Expect = 3.5
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 10/59 (16%)
Frame = +1
Query: 40 IIQMSETL---KLRGTLCGHNGWITQI-------ATNPKYPDMILSSSRDKTLIVWKLT 186
II +ET+ + G GH+ ++ I A N +I S D TLI+W+LT
Sbjct: 114 IITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 172
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 24.2 bits (50), Expect = 3.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 142 LSSSRDKTLIVWKLTRDETSYGL 210
LS S DKT+ VW L+ Y L
Sbjct: 140 LSGSDDKTVKVWDLSTGAVQYDL 162
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 24.2 bits (50), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 216 LWQAVAGFVSS*FPHDKSFIS 154
LW + F+SS FP DK+F +
Sbjct: 599 LWFLLRMFISSVFPVDKTFFA 619
>SPBC8D2.16c |||DUF171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 315
Score = 23.8 bits (49), Expect = 4.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 160 KTLIVWKLTRDETSYGLPQKRLYGHSHFISDV---VLSSD 270
KT VWK++R + YG+ + L ++ + LSSD
Sbjct: 36 KTSFVWKISRIVSLYGIDEIILLEDPEYVQNTQVHTLSSD 75
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 23.4 bits (48), Expect = 6.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 85 GHNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDE 195
GH + IA + + + + SRDK++ +W+ T D+
Sbjct: 376 GHENEVKCIAWSCN-GNYLATCSRDKSVWIWEATEDD 411
>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 580
Score = 23.4 bits (48), Expect = 6.1
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +1
Query: 61 LKLRGTLC-GHNGWITQIATNPKYPDMILSSSRDKTLIVW 177
L + LC G G+I + A + D +LS S TL VW
Sbjct: 410 LAMAFVLCFGALGYICESAQSDTVFDWLLSISNLATLFVW 449
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 23.0 bits (47), Expect = 8.0
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = -3
Query: 171 DKSFIS**RQNHVRVFRISRNLSNPAIMATKRASEF*CFTHLYNPQ*AAHQPTRT 7
D IS N +RV+ ++ +L++ M R F L NP+ + T T
Sbjct: 72 DAKIISNLGANVIRVYAVNASLNHDKCMEAFRNESIYVFLDLANPKTGIDRDTPT 126
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 181 LTRDETSYGLPQKRLYGHSHFISDV 255
L ++ LPQKRL +SH + V
Sbjct: 383 LLKENILIPLPQKRLLDNSHHLDSV 407
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +1
Query: 79 LCGHNGWITQIATNPKYPDMILSSSRDKTLIVWKL 183
L GH +T + + + PD++ + S D ++ W L
Sbjct: 318 LHGHTRAVTDMNWHRQNPDVLATCSIDSSVHCWDL 352
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 23.0 bits (47), Expect = 8.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -1
Query: 230 PYRRFCGRP*LVSSLVNFHTIRVLSRDEDKIMSG 129
P+ R+ V+S+ FH +V RD+ + G
Sbjct: 141 PFARWLAMNPKVTSIKRFHIAKVYRRDQPAMTKG 174
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 23.0 bits (47), Expect = 8.0
Identities = 15/62 (24%), Positives = 25/62 (40%)
Frame = +1
Query: 88 HNGWITQIATNPKYPDMILSSSRDKTLIVWKLTRDETSYGLPQKRLYGHSHFISDVVLSS 267
H + ++ NP + ++ S D +W +T E +L GH I + S
Sbjct: 60 HKDSVFSVSINPVHSNLCASGGGDDLGYIWDITTGEQIC-----QLTGHKDSIVAIDWSF 114
Query: 268 DG 273
DG
Sbjct: 115 DG 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,129,842
Number of Sequences: 5004
Number of extensions: 19255
Number of successful extensions: 103
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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